Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_P16
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0446 - 3371829-3372132,3374691-3375673 32 0.61
06_01_0107 - 854756-854883,855126-856968 31 0.81
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271 31 0.81
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858... 30 2.5
03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117 29 3.3
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610 29 5.7
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 29 5.7
12_01_0808 + 7418878-7420476 28 7.6
12_01_0346 + 2652181-2653566 28 7.6
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940... 28 7.6
11_01_0762 + 6400052-6401845,6401977-6402609 28 10.0
10_04_0012 + 7555067-7555867 28 10.0
07_03_1469 - 26742772-26743848 28 10.0
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902... 28 10.0
02_05_0306 - 27741506-27741994 28 10.0
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 31.9 bits (69), Expect = 0.61
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Frame = -3
Query: 497 RPTQEDLAVRTNLDALIARSPSEEFI-FSVP----RD-PYLSPYWADDELLKMFPPVRIL 336
RPT +LA A + R + + ++P +D P ++P+ L+ R+L
Sbjct: 206 RPTPSELAAPAT--AFLTRDMCDRYCRLALPAGADKDHPLVNPFGPASRSLEAVDVGRVL 263
Query: 335 TVHLDPCL--DDCVMFAKKLKTLGNVVGIEVLEGLPHGFLNFSLMVKEAXRGFETLRR 168
V D L D V +A+++K +G V + V G H F M E +RR
Sbjct: 264 VVAADGDLLRDKNVEYAERMKAMGKDVELVVFAGEEHAFFGVKPMSAATGELVEVIRR 321
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 353 PPVRILTVHLDPCLDDCVMFAKKLKTLGNVVGIEVLEGLPHG 228
PPV L +L P DC +FA G++ ++E PHG
Sbjct: 171 PPVTALLAYLSPRRTDCFLFAGHAD--GSIAAHRLIESSPHG 210
>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
Length = 375
Score = 31.5 bits (68), Expect = 0.81
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 452 LIARSPSEEFIFSVPRDPYLSPY--WADDELLKMFPPVRILTVHLDPCLDDCVMFAKKLK 279
L +R P + D Y SP W D L+M P + C D +AK++K
Sbjct: 134 LYSREPGRAVKYHCNFDLYQSPVANWRDTLYLRMAPDPPPAADLPEICRDALFEYAKQVK 193
Query: 278 TLGNVVGIEVLEGL 237
LGN + + EGL
Sbjct: 194 NLGNTLFELLSEGL 207
>10_08_0977 -
21985149-21985277,21985348-21985722,21985824-21985874,
21985964-21986189,21986289-21986359,21986430-21986549,
21986641-21986835,21986921-21986985,21987894-21987984,
21988700-21988761,21988854-21988904,21989172-21989273,
21989873-21989980,21990071-21990134,21990246-21990392
Length = 618
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 503 IVRPTQEDLAVRTNLDALIARSPSEEFIFSVPRDPYLSPYWADDELLKM 357
IV +Q D + N+D +IAR +EF S P +LS + L K+
Sbjct: 246 IVNRSQAD--INKNIDMIIARRKEQEFFASSPEYSHLSSRMGSEYLAKL 292
>03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117
Length = 388
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 267 VSECFQFFGEHHAIVQARVQMYSQYPDG-WEHLEQFIIGPVRRQIRVPRHREYELFGRTA 443
V++ + G A+ ++R + S YP G E+++ + VR + V E+E+ T
Sbjct: 169 VADGLRALGYDAAVCRSRWEKTSSYPAGEHEYIDAVVGEEVRLIVEVDFRSEFEVARSTK 228
Query: 444 SYQSIQIRAYRQVFLCGPD 500
+Y++ ++A +F+ PD
Sbjct: 229 AYRA-ALQALPPLFVGTPD 246
>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
Length = 913
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 335 TVHLDPCLDDCVMFAKKLKTLGNVVGIEVLEGLPHGFLNFSL 210
++HL+PC +D K LK GN++ + + L G + +
Sbjct: 761 SIHLEPCSEDYKYTLKSLKLHGNLLQLPLFVTLLSGLIELCI 802
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 524 TSTGSSAIVRP---TQEDLAVRTNLDALIARSPSEEFIFSVPRDPYLSP 387
+S S++ RP T D AV NLD A + E + PRDP ++P
Sbjct: 66 SSAASASSCRPSAITGRDRAVVVNLDRARAVITASEVLVPSPRDPAVAP 114
>12_01_0808 + 7418878-7420476
Length = 532
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = -3
Query: 650 GRRKTVNSPN*RGGPRQXG*RLKPE*VKRPPASWARCRPGWPTSTGSSAIVRPTQEDLAV 471
G +N+P G P Q R P + PPA P S+ S+A ++ +
Sbjct: 274 GPTSFLNNPGLCGFPLQVPCRAVPPPTQSPPAPTTTTTTTTP-SSASAAAAAASEHHQPI 332
Query: 470 RTNLDALIA 444
RT+L ALI+
Sbjct: 333 RTSLIALIS 341
>12_01_0346 + 2652181-2653566
Length = 461
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 478 KSSCVGLTMALDPVDVGQPGLHRAHEAGGRFTYSG 582
KS C L DV Q LH + A G F++SG
Sbjct: 301 KSQCELAKRTLSSHDVAQVNLHATNLANGAFSFSG 335
>01_07_0131 +
41292800-41293400,41293522-41293649,41293759-41294019,
41294154-41294416,41294507-41294831
Length = 525
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 468 HEFGCSDSSQSVRRVHILGASGPLSVSVLG 379
H SD + +VRRV LG S PL+V+ G
Sbjct: 68 HPGSVSDVAATVRRVFQLGRSSPLTVAARG 97
>11_01_0762 + 6400052-6401845,6401977-6402609
Length = 808
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 333 CTFGPVPGRLRDVRQKIENTRKRCRHRSVRGPASRIPQ--FLSHGQG 199
C F P R+R VR+ ++ TRK+C VR PA + FLS+ G
Sbjct: 131 CKF-PEEWRMRSVRKYLQYTRKKC----VRDPAPLAEKRTFLSYAAG 172
>10_04_0012 + 7555067-7555867
Length = 266
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 601 CRGPP-LQLGLLTVFRRPVYWSFLFDLPLRAIVVGC 705
CR PP L + LLT F + ++W + IV+GC
Sbjct: 198 CRQPPNLPVELLTSFCKELHWEVEGGILTSGIVLGC 233
>07_03_1469 - 26742772-26743848
Length = 358
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 371 ELLKMFPPVRILTVHLDPCLDDCVMFAKKLKTLGNVVGIEVLEGLPHGFLNF 216
EL + FPP ++ DP D + L+ G V + HGF F
Sbjct: 280 ELAEAFPPAMVVIGGFDPLQDWQRRYVDVLRRKGKAVEVAEFPDAFHGFYGF 331
>07_01_1037 -
9026198-9026586,9026773-9026937,9027010-9027096,
9027173-9027245,9027947-9028012,9028096-9028194,
9028710-9028772,9028959-9029345
Length = 442
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -3
Query: 518 TGSSAIVRPTQEDLAVRTNLDALIARSPSEEFIFSVPRDPYLSPYWADDELLKMF 354
TG+ IV PTQE+ +V +N DA + + S P W DD+L ++F
Sbjct: 390 TGTLGIVLPTQENSSV-SNSDATTLSAS----LHSQPNKMASVTEWTDDQLSELF 439
>02_05_0306 - 27741506-27741994
Length = 162
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 293 AKKLKTLGNVVGIEVLEGLPHGFLNFSLMVKEAXRGFETLRRENEAVI 150
A+ + G V G+ +L+GLPHG L+ A G RR V+
Sbjct: 6 ARLIAVGGAVFGVALLQGLPHG-PAVQLVSLPARAGLHAARRRRRRVL 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,678,824
Number of Sequences: 37544
Number of extensions: 545559
Number of successful extensions: 1619
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -