Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P15
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.2  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.6  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   5.6  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   5.6  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   7.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.4  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   9.7  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 800 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVXTR 690
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 261 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 121
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 451 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -1

Query: 345 STSP*TRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 166
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 165 RFRSGGRFC 139
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 687 ICRRSKMSLRNKVTLYKTCIRPRHDLC 607
           +C+R    L N++     C  P H LC
Sbjct: 195 VCQRGHSPLSNRIVFCDGCNSPYHQLC 221


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 156 SGGRFCEARLLLGFVLATSSGLSPVSSPTKVKA 58
           S G F +A   +   LA +SGLS + + T VKA
Sbjct: 449 SMGAFADALDTIPLALAENSGLSSIEALTAVKA 481


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 332 KHVISDPPDPLTVLLGTSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 675 SKMSLRNKVTLYKTCIRPRHDLCKCSVRSRGPHTLKILSN 556
           S  SL +K       IRP +++   S  SR P T  + SN
Sbjct: 292 STASLSDKKNPGSVHIRPNNEVAPSSAPSRAPSTTSVESN 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,565
Number of Sequences: 5004
Number of extensions: 58707
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)