Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P13
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     34   0.15 
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    29   3.3  
01_06_0475 + 29610268-29610711                                         28   7.7  

>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -1

Query: 554 LTGHDDFRCVNFSSPRK-LACFLVCXL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 384
           + G  D +  +FSS    + C ++C     G  + ++ S+  TT+   HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201

Query: 383 TTFPILRTEWKAVDVAQNTSS 321
              P++ T    +  + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220


>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -2

Query: 307 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGG 149
           S NG       R P SS  +L  +G    L+L  S   F P   SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGG 249


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 271 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 182
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,908,220
Number of Sequences: 37544
Number of extensions: 445176
Number of successful extensions: 1249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)