Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P09
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...   103   4e-23
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    71   1e-13
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   3.2  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   9.6  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    25   9.6  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score =  103 bits (246), Expect = 4e-23
 Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
 Frame = -3

Query: 711 NTDSDPARFGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPGPESLSS*GIAPQKTYLCR 532
           N   +P+      V+++DCQFHQCV+L +FE EH I+FIPP  E +        +     
Sbjct: 241 NNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPDGE-VELMSYRSHENINIP 299

Query: 531 FASSRSCGRWAAPRWKSRLC*RVTSSPPLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKA 352
           F       + +  +   R+  R    P  L   +  +IP P N         +GKA Y+ 
Sbjct: 300 FRIVPIVEQLSKQKIIYRISIRA-DYPHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEP 358

Query: 351 SENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRY 181
           SEN I WKI R  G  E    AE+EL  T  ++ W +PPIS+ F +  F  SG  V+Y
Sbjct: 359 SENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQY 416



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 33/42 (78%)
 Frame = -2

Query: 583 GEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNF 458
           GE ELM YR+ ++I++PFR++P+V ++ + K+  ++ +++++
Sbjct: 283 GEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADY 324



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 179 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 87
           L+V EP  + S +  IKWVRY  R+G  E R
Sbjct: 417 LRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
 Frame = -3

Query: 672 VVIDDCQFHQCVKLSKFETEHSISFIPPGPE-SLSS*GIAPQKTYLCRFASSRSCGRWAA 496
           V ++D +FHQCV+L++FE + +ISFIPP  E  L S  ++     L  +    S    + 
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVRPLI-WVECESIVH-SG 288

Query: 495 PRWKSRLC*RVTSSPPLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRM 316
            R +  +  +       +   +++ IP P +    +     G  +Y   + A+VW IK+ 
Sbjct: 289 SRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKF 348

Query: 315 AGMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRY 181
           AG KE  + AE+ L  ++ +  +   + P+ + F +P F  SG +VRY
Sbjct: 349 AGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRY 396



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 179 LKVFEPKLNYSDHDVIKWVRYIGRSG 102
           LK+ EPKLNY     + WVRY+ ++G
Sbjct: 397 LKITEPKLNY---HAMPWVRYVTQNG 419


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 324 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 181
           K++   + TQ+   +ELL T T+++W   P    +   +  S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 507 RWAAPRWKSRLC*RVTSSPPLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAI 337
           R A   W + LC   TSS P + QK      + +  +   ++C +G    +  +NA+
Sbjct: 373 RGAEKLWINDLCVISTSSLPSVLQKTSFMYISDIYVNEDDIVCFQGSLWTQIDKNAL 429


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 417 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 259
           P  L+ + VQL+ L  +  Y ASEN  + K +R+A +      A+ +L +  T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,166
Number of Sequences: 5004
Number of extensions: 61366
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)