Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_P09
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 111 5e-25
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 78 7e-15
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 77 2e-14
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 38 0.007
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 35 0.067
01_06_0888 + 32738275-32739567 31 1.4
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135 29 5.8
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 111 bits (268), Expect = 5e-25
Identities = 66/178 (37%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Frame = -3
Query: 702 SDPARFGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPGPE-SLSS*GIAPQKTYLCRFA 526
S PA+ GK + +DD FHQCV L++F +E ++SF+PP E L I R
Sbjct: 237 SRPAKSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVL 295
Query: 525 SS-RSCGRWAAPRWKSRLC*RVTSSPPLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKAS 349
+ + GR R + + + + + VK+P P T+ GKAKY AS
Sbjct: 296 PTIKELGR---TRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNAS 352
Query: 348 ENAIVWKIKRMAGMKETQLSAEIELLET-DTKKKWTRPPISMGFEVP-FAPSGFKVRY 181
+++VWKI++ G E +SAE+EL+ T KK W RPPI M F+VP F SG +VR+
Sbjct: 353 IDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRF 410
Score = 62.1 bits (144), Expect = 5e-10
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = -2
Query: 583 GEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNF 458
GEFELM+YR T+ ++LPFRV+P ++E+GRT+ME+ V +KS F
Sbjct: 275 GEFELMKYRITEGVNLPFRVLPTIKELGRTRMEINVKVKSVF 316
Score = 34.7 bits (76), Expect = 0.088
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1
Query: 191 RSAXLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 84
R LKV+E S ++ ++WVRYI R+G YE RC
Sbjct: 407 RVRFLKVWEK----SGYNTVEWVRYITRAGSYEIRC 438
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 78.2 bits (184), Expect = 7e-15
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = -3
Query: 666 IDDCQFHQCVKLSKFETEHSISFIPP-GPESLSS*GIAPQKTYLCRFASSRSCGRWAAPR 490
+DD +FHQCV+L++FE + +ISFIPP G L + ++ Q L + + + R
Sbjct: 212 LDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVE--KHSRSR 269
Query: 489 WKSRLC*RVTSSPPLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 310
+ + R +E+++P P +++ + G A Y +A+VWKIK G
Sbjct: 270 IQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPG 329
Query: 309 MKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRY 181
KE AE L + ++ + PI + FE+P F SG +VRY
Sbjct: 330 GKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRY 375
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = -3
Query: 666 IDDCQFHQCVKLSKFETEHSISFIPP-GPESLSS*GIAPQKTYLCRFASSRSCGRWAAPR 490
+DD +FHQCV+L++FE + +ISFIPP G L + ++ Q L + + + R
Sbjct: 237 LDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIE--KHSRSR 294
Query: 489 WKSRLC*RVTSSPPLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 310
+ + R +E+++P P + + + G A Y +A+VWK+K G
Sbjct: 295 IELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPG 354
Query: 309 MKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRY 181
K+ AE L + + + PI + FE+P F SG +VRY
Sbjct: 355 GKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRY 400
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 684 GKPVVVIDDCQFHQCVKLSKFETEHSISFIPPGPE 580
G V++DDC FH+ V L F+ + ++ IPP E
Sbjct: 250 GGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGE 284
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 613 TFHLLHTTRTGEFELMRYRTTKDISLPFRVIPLVREVGRTKM 488
T HL+ GEF +M YR T++ PFRV L+ E G +++
Sbjct: 275 TLHLIPPD--GEFAVMNYRITQEFKPPFRVTALIEEAGPSRI 314
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 35.1 bits (77), Expect = 0.067
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 687 FGKPVVVIDDCQFHQCVKLSKFETEHSISFIPP-GPESLSS*GIAPQKT 544
F P + I+D +FH CV+ +E+ +SF+PP G L S + KT
Sbjct: 230 FSNPTI-INDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKT 277
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 583 GEFELMRYRTTKDISLPFRVIP-LVREVGRTKMEVKVVLKSN 461
G+FELM YR K + P V P L + G ++ V V +K++
Sbjct: 263 GQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKND 304
>01_06_0888 + 32738275-32739567
Length = 430
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 337 DSVLRGFILRFPLQANQLHPAGVQRSWNLHFDLL 438
D+V+R R P N++H AGV R W H + L
Sbjct: 12 DAVVREIANRLPCVYNRVHLAGVCRPWREHLERL 45
>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
Length = 485
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 222 TPWRWAGASTSSWCRSRGAQSR 287
TP A STS WCRSRG R
Sbjct: 377 TPISSAQQSTSIWCRSRGGNRR 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,844,064
Number of Sequences: 37544
Number of extensions: 486339
Number of successful extensions: 1367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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