Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P08
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    28   1.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   2.1  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.8  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   6.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   6.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   8.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   8.7  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 755 YTNHPRLNIHFHQSPDAVLEGVRAGXKPPLSSEAPSAYLTPSSLGMXKGVSPPY-FQVND 579
           + N P   + F      ++ GV     PP SS+ P  Y+        KG+S  Y   VND
Sbjct: 14  WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 817 SSHPPLRFRXHQPDHQ-IPXFHTPTTPDLTSISINPLTP 704
           +S PP      QP HQ    FHTPT P  T +S    +P
Sbjct: 120 NSSPPNSLSS-QPKHQEFHLFHTPTIPRTTQLSSKTSSP 157


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 361 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 266
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 571 KLRALLVVIPRILRSPPPTHPLIEDV 494
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 574 DSSFT*K*GGETPLXMPSDEGVRYADGASDDNGGFXPARTPSS 702
           +SSF    G  TPL    D G  YAD A+  N    PA TP +
Sbjct: 160 NSSFVGNSGSGTPLD--GDSGSFYADSANLTNREPYPAWTPEN 200


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 460 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVL 326
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVV 652


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 824 LCIKPPSPAISXTSTRSSNPXIPYTNHPRLNIHFHQS 714
           L + P +P+ S     S N  +  TN P LN HF QS
Sbjct: 346 LGLDPKNPSASFPRVVSQNNML--TNKPVLNNHFQQS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,084
Number of Sequences: 5004
Number of extensions: 54777
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)