Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P07
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   108   1e-24
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   104   2e-23
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.25 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.77 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  108 bits (259), Expect = 1e-24
 Identities = 51/73 (69%), Positives = 58/73 (79%)
 Frame = -3

Query: 577 ITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 398
           I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R  
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSA 195

Query: 397 RWDVVVDLFFYRD 359
            WDV+ DL+FYRD
Sbjct: 196 PWDVMPDLYFYRD 208



 Score = 34.3 bits (75), Expect = 0.020
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 656 FTNQIQAAFREPRLLIVXDPAQDHQ 582
           FTN I   +REPRL++V DP  D Q
Sbjct: 110 FTNYITRTYREPRLIVVTDPRADAQ 134


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  104 bits (249), Expect = 2e-23
 Identities = 49/73 (67%), Positives = 57/73 (78%)
 Frame = -3

Query: 577 ITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 398
           I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R  
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTT 196

Query: 397 RWDVVVDLFFYRD 359
            W+V+ DL+FYRD
Sbjct: 197 AWEVMPDLYFYRD 209



 Score = 34.7 bits (76), Expect = 0.015
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -2

Query: 656 FTNQIQAAFREPRLLIVXDPAQDHQ 582
           FTN I   +REPRL+IV DP  D Q
Sbjct: 111 FTNYITRTYREPRLIIVTDPRADAQ 135


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 571 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 586 IKPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           +K  T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 71  LKVQTVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,224
Number of Sequences: 5004
Number of extensions: 47183
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)