Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P06
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   2.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    27   2.8  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   8.6  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.6  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 510 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 331
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 330 THRHS 316
             + +
Sbjct: 81  VRKEA 85


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 584  SFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRR 450
            SF  +L  A + ++  AA  +N + ++  N+I    +R++NRR +
Sbjct: 1253 SFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 802 LLRCVEGSPSASPPEHSAILTLGSSNLGH 888
           +L C  G      P+HSA LT+G   + H
Sbjct: 546 MLGCEAGGDGVDTPKHSATLTMGKVGVFH 574


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 414 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 289
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 465 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 307
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 326 WVSSLVEPFVASDGFDEDGDRCLWCLK 406
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 686 SRKCILVQS--RFCRIAVGAPWFLRNVDLHDDLEL 588
           S +C+L+ S  R+CR  + A W+   + L+  L L
Sbjct: 315 SIQCLLILSIYRYCRTEISAAWYYMKLGLNCCLRL 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,625
Number of Sequences: 5004
Number of extensions: 60448
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)