Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_P06
(923 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37) 31 1.3
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 30 2.3
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_29434| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-25) 29 5.3
SB_53402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_36917| Best HMM Match : RinB (HMM E-Value=2.2) 28 9.3
SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 32.3 bits (70), Expect = 0.57
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 396 HKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGSRFRXR 265
H+ +P S+ + T + ELTH +SP S + L RFR R
Sbjct: 224 HRVPNPGESHEAEETSSESFELTHENSPRHISVEDLPKGRFRSR 267
>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
Length = 646
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = -3
Query: 519 PSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGST 340
P+ R L T+P RPN P+ + + +S S GA ++K S S+ P L + S+
Sbjct: 75 PTTNVRLTLLTQPPRPNQDPN---RKTNRAASGSWCGARTYNKRASTLSTQPRL-YQDSS 130
Query: 339 SELTHRHSPLSFSP 298
E T +H + P
Sbjct: 131 KEQTEQHQRVGAEP 144
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -3
Query: 495 LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 337
L P RP G S K+ GS S + KH SPS S+ + TKG+T+
Sbjct: 472 LSAPPPRPQGNLLESLKSSE-GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 30.3 bits (65), Expect = 2.3
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 516 SHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNP-SLATKGST 340
SHR R KL RP + +G +T+ K H I S +P S AT ++
Sbjct: 593 SHRRRHKLRARPFQADGTDTTNSKLTHRDELSYIPLKSSSSGSTQTSRDSPRSTATFLAS 652
Query: 339 SELTHRHSPLSFSPDLLSGS 280
S+ P+S S D SGS
Sbjct: 653 SDSHGAAFPVSASIDTHSGS 672
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.9 bits (64), Expect = 3.0
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = -3
Query: 522 EPSHRS-RWK-LH----TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPS--SSN 367
+P+ RS RWK LH + S N P TSP + S N A H SPS SS
Sbjct: 2792 KPTARSIRWKELHCNTSSSSSSQNTSPGTSPYTSSHQIGRSPNHALPHPSTGSPSQPSSR 2851
Query: 366 PSLATKGSTSELTHRHSPLSFSP 298
PS ++ +++ + HS S SP
Sbjct: 2852 PSRSSSFYSAQGSF-HSFTSLSP 2873
>SB_29434| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-25)
Length = 416
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 527 VVPPSQNGAAMPTVDTY*KSRAPGRR 604
VV P QNG +P TY +S PG R
Sbjct: 16 VVSPYQNGTEIPFPQTYSRSHIPGSR 41
>SB_53402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 435 NDVLWATSTVYHSVYWVG-----YVISSGYDERVLMSCRLLKMAQ 554
NDVL +YH VYW G ++S ++E V SC K+ +
Sbjct: 22 NDVLAQRLLIYHPVYWGGRTSLSLAVASRHEEFVAHSCCQKKLTE 66
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 399 HHKHRSPSSSNPSLATKGSTSELTHRHSP-LSFSP 298
HH+H SPSS +PS + H H P LS SP
Sbjct: 605 HHRH-SPSSPSPSCIAIITVIHYRHNHHPALSSSP 638
>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 492 HTRPSRPNGKPSTSPKARHYGSS 424
HTRP+R G+P+T P H+ S
Sbjct: 502 HTRPTRTVGRPATLPPQSHHHRS 524
>SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)
Length = 522
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 483 PSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSF 304
P P+G+P + + + + + HHK+ +S L T +S R SPL+
Sbjct: 92 PRPPSGRPQSRRRKKSATNELRVRRKSSHHKYTEDASRLTGLPTHRISS--YKRDSPLAL 149
Query: 303 SPDL 292
P L
Sbjct: 150 QPSL 153
>SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 28.3 bits (60), Expect = 9.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 293 RSGEKLSGLCLWVSSLVE 346
R+G + G+CLWV S++E
Sbjct: 12 RNGSSVPGMCLWVVSIIE 29
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,523,524
Number of Sequences: 59808
Number of extensions: 492264
Number of successful extensions: 1291
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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