Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_P03
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.5
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 30 2.5
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 30 2.5
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 30 2.5
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 3.3
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 3.3
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.3
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 4.3
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 4.3
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 4.3
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 5.7
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 5.7
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 5.7
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 5.7
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 5.7
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 10.0
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 10.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 10.0
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 31.5 bits (68), Expect = 0.81
Identities = 23/78 (29%), Positives = 27/78 (34%)
Frame = -1
Query: 546 PAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPTRQAGSGPAGYS 367
P+ C PP G G+ P V ST +P GP G
Sbjct: 87 PSNCPAGPPGPPGAPGDQGLDGAPGQPGNVGQNAVVASIAASTSECIPCPAGAPGPQGPD 146
Query: 366 GTPAAPSGRPDGLPYRDG 313
G P AP P G P +DG
Sbjct: 147 GAPGAPG--PSGQPGQDG 162
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 387 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 301
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 387 SGPAGYSGTPAAPSGRPDGLPYRDG 313
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 154 SALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQ- 330
S L S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 46 STHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSL 105
Query: 331 PVGPPRRCRWCPGIP 375
PV P G+P
Sbjct: 106 PVRSPAIMTLMGGVP 120
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -1
Query: 387 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 307
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 408 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 313
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 408 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 313
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 408 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 313
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 149 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 48
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 149 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 48
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 149 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 48
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 387 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 307
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.3
Identities = 32/90 (35%), Positives = 36/90 (40%)
Frame = -1
Query: 579 RGPEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPT 400
R P+ P P PC+ P P QG P G PA G A S P
Sbjct: 136 RPPQQPCEPITPPPCK--PCP---QGPAGPPGPPG--PAGDAGSDGSPGAPGSDGQ--PG 186
Query: 399 RQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 310
GPAG +G P AP G P G P DG+
Sbjct: 187 AAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/81 (30%), Positives = 30/81 (37%)
Frame = -1
Query: 579 RGPEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPT 400
R P+ P P PC+ P P GA P G A G + P
Sbjct: 131 RPPQQPCEPITPPPCK--PCPAGPAGAPGPAGPAGDAGANGNPGA----PGQDGQPGAPG 184
Query: 399 RQAGSGPAGYSGTPAAPSGRP 337
+ SGP G G P AP G+P
Sbjct: 185 NKGPSGPNGNPGAPGAP-GQP 204
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 384 GPAGYSGTPAAPSG-RPDGLPYRDG 313
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 384 GPAGYSGTPAAPSG-RPDGLPYRDG 313
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 384 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 292
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/81 (30%), Positives = 29/81 (35%)
Frame = -1
Query: 579 RGPEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPT 400
R P+ P P PC+ P P GA P G A G P
Sbjct: 131 RPPQQPCEPITPPPCK--PCPAGPAGAPGPAGPAGDAGANGNPGA----PGNDGQPGAPG 184
Query: 399 RQAGSGPAGYSGTPAAPSGRP 337
+ SGP G G P AP G+P
Sbjct: 185 NKGPSGPNGNPGAPGAP-GQP 204
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/81 (30%), Positives = 29/81 (35%)
Frame = -1
Query: 579 RGPEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPT 400
R P+ P P PC+ P P GA P G A G P
Sbjct: 131 RPPQQPCEPITPPPCK--PCPAGPAGAPGPAGPAGDAGANGNPGA----PGNDGQPGAPG 184
Query: 399 RQAGSGPAGYSGTPAAPSGRP 337
+ SGP G G P AP G+P
Sbjct: 185 NKGPSGPNGNPGAPGAP-GQP 204
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -1
Query: 384 GPAGYSGTPAAPSGRP--DGLPYRDGRR 307
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/81 (30%), Positives = 29/81 (35%)
Frame = -1
Query: 579 RGPEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPT 400
R P+ P P PC+ P P GA P G A G P
Sbjct: 131 RPPQQPCEPITPPPCK--PCPAGPAGAPGPAGPAGDAGANGNPGA----PGNDGQPGAPG 184
Query: 399 RQAGSGPAGYSGTPAAPSGRP 337
+ SGP G G P AP G+P
Sbjct: 185 NKGPSGPNGNPGAPGAP-GQP 204
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/81 (30%), Positives = 29/81 (35%)
Frame = -1
Query: 579 RGPEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALPAL*RAGRGVIRATRSTVYRVPT 400
R P+ P P PC+ P P GA P G A G P
Sbjct: 131 RPPQQPCEPITPPPCK--PCPAGPAGAPGPAGPAGDAGANGNPGA----PGNDGQPGAPG 184
Query: 399 RQAGSGPAGYSGTPAAPSGRP 337
+ SGP G G P AP G+P
Sbjct: 185 NKGPSGPNGNPGAPGAP-GQP 204
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 384 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 286
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 405 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 310
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +1
Query: 169 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSKTS 312
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 313 AVSVRQPVGPP 345
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 573 PEXGIRPYVPAPCRWRPPPGEGQGAT*GVRPCGALP 466
P GI Y PAP PPPG G G+ P G P
Sbjct: 708 PPPGIPGYPPAP----PPPGVGPPPPQGIPPMGFDP 739
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,374
Number of Sequences: 27780
Number of extensions: 359673
Number of successful extensions: 1494
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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