Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P02
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 439 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 260
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 259 SH--SKRETRRRSP 224
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical
           protein F18E3.11 protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 84  STTPRQERKSSTDYSEPRHRTEVYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 245
           STT    RKSST    PRH   +     +   ++ +   S  L D N L+R+ S
Sbjct: 30  STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,936,941
Number of Sequences: 27780
Number of extensions: 376662
Number of successful extensions: 1113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)