Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_O23
         (943 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               126   2e-29
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         108   6e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   5e-10
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   4.1  
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   28   9.5  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   9.5  
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  126 bits (305), Expect = 2e-29
 Identities = 54/65 (83%), Positives = 61/65 (93%)
 Frame = -3

Query: 626 QGKGYKGVTSRWHTRKLPRKTHKGLRKVACIGAWYPSRVSFTVARAGQKGYHHRTEMNKK 447
           +G G+KGVT RW T+KLPRKTHKGLRKVACIGAW+P+RVSF+VARAGQ GYHHRTE+NKK
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKK 283

Query: 446 IYRIG 432
           IYRIG
Sbjct: 284 IYRIG 288



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -1

Query: 451 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 344
           +K   + QGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 282 KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  108 bits (260), Expect = 6e-24
 Identities = 50/66 (75%), Positives = 55/66 (83%)
 Frame = -2

Query: 294 KGCCMGPKKRIITLRKSLCVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290

Query: 114 KDRIRE 97
            DR +E
Sbjct: 291 SDREKE 296



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = -1

Query: 343 GGFPHYGEVNNDFVMIQGLLHG 278
           GGFPHYG+VN DF+M++G + G
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVG 236


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 451 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 344
           +K   + QGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 11  KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 479 GYHHRTEMNKKIYRIG 432
           GYHHRTE+NKKIYRIG
Sbjct: 2   GYHHRTELNKKIYRIG 17


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 120
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 735 GGXXXPXKXFSXGPXXXIXXPPXGXPPPXKXWGXP 839
           GG   P   ++ GP      P  G PPP   +G P
Sbjct: 56  GGYPPPQPGYAGGPPPPGIAPGIGGPPPSGQYGAP 90


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 160 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 35
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 462 STVMITFLTSTSYSERHPRRIPSSNAGNFPKTLVCLTG 575
           S   I+F  +T Y +RH RR  S N  +F   +  L G
Sbjct: 96  SRTPISFPNTTQYRDRHARRSRSQNGVSFLINIATLVG 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,992,531
Number of Sequences: 59808
Number of extensions: 520703
Number of successful extensions: 1312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)