Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_O22
(811 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 221 2e-56
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 210 2e-53
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 179 7e-44
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 165 1e-39
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 143 5e-33
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 130 3e-29
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 4e-24
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 98 2e-19
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 5e-08
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 60 5e-08
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 58 3e-07
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 5e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 56 8e-07
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 51 4e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 49 1e-04
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 48 2e-04
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 48 4e-04
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 47 5e-04
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 45 0.002
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 45 0.002
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 44 0.003
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.006
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 42 0.014
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 42 0.018
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 38 0.40
UniRef50_Q0W544 Cluster: Phosphoenolpyruvate synthetase; n=3; ce... 36 0.91
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_Q8TB36 Cluster: Ganglioside-induced differentiation-ass... 35 2.1
UniRef50_Q4PDK1 Cluster: Putative uncharacterized protein; n=1; ... 35 2.8
UniRef50_Q192G3 Cluster: Pyruvate phosphate dikinase, PEP/pyruva... 33 6.4
UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=... 33 8.5
UniRef50_Q17U53 Cluster: DNA-directed RNA polymerase, putative; ... 33 8.5
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 8.5
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 8.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 221 bits (540), Expect = 2e-56
Identities = 115/181 (63%), Positives = 135/181 (74%), Gaps = 3/181 (1%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*E-SCLH-WSLASF*GVVHCSSCWSERLSSPY*NE 453
KGKGYKGVTSRWHTKKLPRKTH+G + +C+ W A V S + + + E
Sbjct: 224 KGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPAR----VAFSVARAGQKGYHHRTE 279
Query: 452 XRKSIV-LDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
K I + QG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G
Sbjct: 280 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVG 339
Query: 275 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 96
KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +
Sbjct: 340 TKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAK 399
Query: 95 E 93
E
Sbjct: 400 E 400
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = -2
Query: 732 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTPRV 553
T+ +K+ WARE LE+ +PV+ VF QDEMID IGVT+G+ + S H + P T R
Sbjct: 189 TVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGV-TSRWHTKKLPRKTHRG 247
Query: 552 LGKLPAL 532
L K+ +
Sbjct: 248 LRKVACI 254
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 210 bits (514), Expect = 2e-53
Identities = 107/180 (59%), Positives = 129/180 (71%), Gaps = 3/180 (1%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*E-SCLH-WSLASF*GVVHCSSCWSERLSSPY*NE 453
KG+G KGVTSRWHTKKLPRKTH+G + +C+ W A V CS + + + E
Sbjct: 224 KGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPAR----VGCSIARAGQKGYHHRTE 279
Query: 452 XRKSIV-LDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
K I + +G H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G
Sbjct: 280 LNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAG 339
Query: 275 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 96
KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 340 TKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/67 (40%), Positives = 41/67 (61%)
Frame = -2
Query: 732 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTPRV 553
T+ +KV WA+ LEK +PV SVF+Q E+ID I VT+G+ ++ S H + P T +
Sbjct: 189 TVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGV-TSRWHTKKLPRKTHKG 247
Query: 552 LGKLPAL 532
L K+ +
Sbjct: 248 LRKVACI 254
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 179 bits (436), Expect = 7e-44
Identities = 97/182 (53%), Positives = 124/182 (68%), Gaps = 5/182 (2%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*E-SCL---HWSLASF*GVVHCSSCWSER-LSSPY 462
+G G+KGVTSRWHTKKLPRKTH+G + +C+ H S +F + R + +
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNK 235
Query: 461 *NEXRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 282
KS + ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G
Sbjct: 236 IYRIGKSALTEEG---------KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAV 286
Query: 281 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 102
+GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D +
Sbjct: 287 LGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFL 346
Query: 101 RE 96
E
Sbjct: 347 AE 348
Score = 75.8 bits (178), Expect = 1e-12
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -1
Query: 583 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRT 461
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRT 230
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 165 bits (401), Expect = 1e-39
Identities = 86/184 (46%), Positives = 119/184 (64%)
Frame = -3
Query: 659 KMK*LTALVSPKGKGYKGVTSRWHTKKLPRKTHQGS*ESCLHWSLASF*GVVHCSSCWSE 480
+++ L + + KGK YKG++S W+TKK+P KTHQ E+ W G+ S W+
Sbjct: 168 RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACIWD-----GL---SVAWAR 219
Query: 479 RLSSPY*NEXRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 300
+ + +K + QG K+GK+IKNNAST+Y KSI+P+GG H G+V NDFV
Sbjct: 220 QKGCHHCTINKKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFV 276
Query: 299 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGT 120
M+K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG
Sbjct: 277 MLKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGP 336
Query: 119 LKKD 108
LKKD
Sbjct: 337 LKKD 340
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 143 bits (346), Expect = 5e-33
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 5/183 (2%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*E-SCLHWSLASF*GVVHCSSC-WSERLSSPY*NE 453
KG G+ GV RW LPRKTH+G + +C+ G H S ++ + +
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRGLRKVACI--------GAWHPSRVMYTVARAGQHGYH 329
Query: 452 XRKSIVLDQGIHKKDGKVIK---NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 282
R L++ I++ G+ + N A+T YDL+ K+ITPMGGF YG V ND+VM+KG
Sbjct: 330 HRTH--LNKKIYQL-GRAVSMEPNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSV 386
Query: 281 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 102
GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRI
Sbjct: 387 AGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRI 446
Query: 101 REE 93
R E
Sbjct: 447 RRE 449
Score = 72.5 bits (170), Expect = 1e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 574 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQE 446
P + +GLRKVACIGAWHPSRV +TVARAGQ GYHHRT + ++
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKK 337
Score = 37.1 bits (82), Expect = 0.52
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -2
Query: 732 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQG 622
TI K++ A+ LEK + +DSVF Q E D VT+G
Sbjct: 243 TIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKG 279
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 130 bits (315), Expect = 3e-29
Identities = 79/179 (44%), Positives = 103/179 (57%), Gaps = 1/179 (0%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*ESCLH-WSLASF*GVVHCSSCWSERLSSPY*NEX 450
KG GYKGVT + P + +G + C+ W A V S + + +
Sbjct: 204 KGNGYKGVTRVDIQRNCPERPIEGCPKLCVGAWHPAR----VTFSVAQVGQKGYHHNGDN 259
Query: 449 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 270
+K + QG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + K
Sbjct: 260 KKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTK 319
Query: 269 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
K +T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 320 KH-LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 4e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3
Query: 407 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 228
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 227 KRAALEK 207
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 98.3 bits (234), Expect = 2e-19
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Frame = -3
Query: 647 LTALVSPKGKGYKGVTSRWHTKKLPRKTHQGS*E-SCLH-WSLASF*GVVHCSSCWSERL 474
+ A+ KG G KGV SRW +LPRKTH+G + +C+ W+ + W+ +
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRV--------AWT--I 248
Query: 473 SSPY*NEXRKSIVLDQGIHKKDGKVIKNNASTEY-DLSEKSITPMGGFPHYGEVNNDFVM 297
S K + ++ I+K + + S D KS+ MGGF +G +NND+++
Sbjct: 249 SRAGQKGYHKRTLFNKKIYKIGSEENFSYYSNSLSDSIVKSVNCMGGFKKFGFINNDYLI 308
Query: 296 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 126
IKG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 309 IKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = -1
Query: 574 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM--------XQENLSYWTKES 419
P + +GLRKVACIG W PSRV++T++RAGQKGYH RT +EN SY++
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGSEENFSYYSNSL 282
Query: 418 TKRMAKLLKTM 386
+ + K + M
Sbjct: 283 SDSIVKSVNCM 293
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -3
Query: 281 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 102
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 101 REE 93
+E
Sbjct: 148 AKE 150
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -3
Query: 362 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 183
E +TP GGF HYGEV N +++++G GP KR++ R +R HT + ++L ++ T
Sbjct: 296 ESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVST 352
Query: 182 SSKFG 168
SSK G
Sbjct: 353 SSKQG 357
Score = 33.1 bits (72), Expect = 8.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 720 KVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
K++WA E L I +D V+ + +D +G+T+G+
Sbjct: 197 KLEWAHERLGGEIGIDDVYEAGKELDVVGITKGK 230
Score = 33.1 bits (72), Expect = 8.5
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 568 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENL 440
+++K R++ +G + V T+ +AGQ GYH RTE+ + L
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRIL 289
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 60.5 bits (140), Expect = 5e-08
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Frame = -3
Query: 647 LTALVSPKGKGYKGVTSRWHTKKLPRKTHQGS*E--SCLHWSLASF*GVVHCSSCWSERL 474
L + KGKG +G RW K K +G + S W A V + ++
Sbjct: 219 LDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAG----QM 274
Query: 473 SSPY*NEXRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 294
+ E K ++ ++GK +K + +TE + ITP GGFPHYG V +DF+MI
Sbjct: 275 GFHHRTELNKRLIAIG----ENGK-LKLDENTEIE-----ITPKGGFPHYGIVRSDFMMI 324
Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 174
G G KRII +R ++R K+ +++ + ++ SK
Sbjct: 325 AGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
Score = 57.2 bits (132), Expect = 5e-07
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = -1
Query: 568 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 455
+ +KG RKV IG WHP+RV +TV AGQ G+HHRTE+
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL 282
Score = 33.5 bits (73), Expect = 6.4
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -2
Query: 801 ATXNEAVKQRQKXLTLWNPT*RCTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQG 622
AT +K ++K + ++E+K + +E L K + V V + E++D I VT+G
Sbjct: 168 ATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKG 227
Query: 621 QRIQ 610
+ Q
Sbjct: 228 KGTQ 231
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 58.0 bits (134), Expect = 3e-07
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -3
Query: 353 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 174
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I T+SK
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYISTTSK 332
Query: 173 FG 168
G
Sbjct: 333 QG 334
Score = 39.1 bits (87), Expect = 0.13
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -2
Query: 729 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQ 610
IE+++ +A+E L K + + VF + E++D IGVT+G+ Q
Sbjct: 169 IEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQ 208
Score = 38.7 bits (86), Expect = 0.17
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 559 KGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTE 458
KG+ R V IG W P V ++V GQ GYH RTE
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTE 260
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 57.2 bits (132), Expect = 5e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = -3
Query: 359 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 180
+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLSTQ 333
Query: 179 SKFG 168
SK G
Sbjct: 334 SKMG 337
Score = 40.3 bits (90), Expect = 0.056
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = -1
Query: 595 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSYWTK 425
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE + L K
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDK 274
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -3
Query: 362 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 183
E ITP GGF HYGEV N +++I+G GP KR+I R + R R +++ ++ T
Sbjct: 276 ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVST 332
Query: 182 SSKFG 168
+SK G
Sbjct: 333 ASKQG 337
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 50.8 bits (116), Expect = 4e-05
Identities = 39/130 (30%), Positives = 59/130 (45%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*ESCLHWSLASF*GVVHCSSCWSERLSSPY*NEXR 447
KGKG++GV RW RKT + + H + S + W+ ++ R
Sbjct: 209 KGKGFQGVVKRWGVTIQDRKTQRK--QKGRH--IGSIGPITPSRVRWTVPMAGQVGYHQR 264
Query: 446 KSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKK 267
H K +++K E +TP GGF +YG V D++MI G GPKK
Sbjct: 265 TE-------HNK--RILKIGEDGE------EVTPRGGFVNYGVVRGDYIMIHGTVPGPKK 309
Query: 266 RIITLRKSLR 237
R+I +R ++R
Sbjct: 310 RLIRVRPAVR 319
Score = 39.9 bits (89), Expect = 0.074
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = -1
Query: 568 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 458
R KG R + IG PSRV +TV AGQ GYH RTE
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTE 266
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -3
Query: 404 KVIKNNASTEYDLSEKS--ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
+ I N +Y E + I GGF HYG V ND+V++ G GP KR+I +R R
Sbjct: 252 RTISNVRVLKYSKGEDADTINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR-- 309
Query: 230 TKRAALEKINLKFIDTSSKFG 168
K ++ + L +I SK G
Sbjct: 310 QKVPDIDNVKLDYISLESKQG 330
Score = 40.3 bits (90), Expect = 0.056
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -1
Query: 574 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSY 434
P ++ K R + +G WHP V TV +AGQ GY RT L Y
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKY 262
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 48.4 bits (110), Expect = 2e-04
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = -3
Query: 503 HCSSCWSERLSS--PY*NEXRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 330
H W R+ + P+ +S V QG + N + + ++ TP GGFP
Sbjct: 225 HARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP-TPDGGFP 283
Query: 329 HYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 168
+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++ T+S G
Sbjct: 284 NYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQG 335
Score = 44.0 bits (99), Expect = 0.005
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -1
Query: 550 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 455
R++ +G W+PSRV TV + GQ GYH RTE+
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL 263
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 47.6 bits (108), Expect = 4e-04
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +1
Query: 610 LYPLPLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFVLDGT 735
L + GD+N +NHFIL ++R++R+ F ++F GP +FV DGT
Sbjct: 48 LETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGT 89
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 47.2 bits (107), Expect = 5e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -3
Query: 365 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 237
S K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 270 SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
Score = 33.5 bits (73), Expect = 6.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 568 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSYWTKESTKRM 407
+H KG ++ +G P+ + F GQ G+H RTE + L ES K +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVGDAESLKEI 274
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -3
Query: 362 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 204
+ +I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 271 DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 559 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 458
K +R++ +G P V +TV RAGQ G+H R E
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIE 257
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -3
Query: 359 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 237
K I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -3
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 237
D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 271 DDDKLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
Score = 36.3 bits (80), Expect = 0.91
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -1
Query: 559 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 458
K +R+V +G P V +TV RAGQ G+H R E
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVE 259
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.006
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -3
Query: 353 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 237
+TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -2
Query: 732 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQ 610
T+ +++ +A + L + VD VF + + ID IGVT+G+ Q
Sbjct: 229 TLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQ 269
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 42.3 bits (95), Expect = 0.014
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = -3
Query: 341 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 174
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +++I S K
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
Score = 41.5 bits (93), Expect = 0.024
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -1
Query: 559 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 458
KG+RKV IG+ P R+ TV GQ GYH RTE
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTE 251
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 41.9 bits (94), Expect = 0.018
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 353 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDTS 180
+TP GGF YG V + FVM+ G G KR I +R ++R + + K + +I +
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339
Query: 179 SKFG 168
SK G
Sbjct: 340 SKQG 343
Score = 33.1 bits (72), Expect = 8.5
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPR--KTHQGS 552
KGKG++GV RW K+LPR K +GS
Sbjct: 210 KGKGFQGVIKRWGVKELPRWHKHRKGS 236
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 37.5 bits (83), Expect = 0.40
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 341 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 237
GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q0W544 Cluster: Phosphoenolpyruvate synthetase; n=3;
cellular organisms|Rep: Phosphoenolpyruvate synthetase -
Uncultured methanogenic archaeon RC-I
Length = 890
Score = 36.3 bits (80), Expect = 0.91
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 559 WCVLRGSFFVCQ-REVTPLYPLPLGDTNAVNHFILGKH 669
WC+ G F+V Q R VT LYP+P D + ++ F+ H
Sbjct: 296 WCLAGGQFYVLQSRPVTSLYPVPRADDSRLHVFVSFGH 333
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -1
Query: 241 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 119
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8TB36 Cluster: Ganglioside-induced
differentiation-associated protein 1; n=37;
Euteleostomi|Rep: Ganglioside-induced
differentiation-associated protein 1 - Homo sapiens
(Human)
Length = 358
Score = 35.1 bits (77), Expect = 2.1
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 461 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVASLCANEK*HLCILCPWVTPM 640
+T +I +L T ER PR MP + +P+ + SL + H CIL P +T +
Sbjct: 90 ATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELT-V 148
Query: 641 QSIISSWANT 670
S+I ++A T
Sbjct: 149 DSMIPAYATT 158
>UniRef50_Q4PDK1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 465
Score = 34.7 bits (76), Expect = 2.8
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 521 MPSSNAGNFPKTLGVSYGVASLCANEK*HLCILCPWVT-PMQSIISSWANTESTGI 685
+P+S GN PKTL +Y V EK H L P +T M S +WA G+
Sbjct: 173 IPASIIGNRPKTLVNAYNVFDFLNVEKIHNATLAPLITDEMLSNALTWAEYHEAGV 228
>UniRef50_Q192G3 Cluster: Pyruvate phosphate dikinase,
PEP/pyruvate-binding; n=2; Desulfitobacterium
hafniense|Rep: Pyruvate phosphate dikinase,
PEP/pyruvate-binding - Desulfitobacterium hafniense
(strain DCB-2)
Length = 837
Score = 33.5 bits (73), Expect = 6.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 559 WCVLRGSFFVCQ-REVTPLYPLPLGDTNAVNHFILGKH 669
WC + G FF+ Q R +T LYPLP F+ H
Sbjct: 265 WCWVNGGFFIVQSRAITTLYPLPESRDGLKRVFVSAGH 302
>UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=1;
Alteromonadales bacterium TW-7|Rep: Methyl-accepting
chemotaxis protein - Alteromonadales bacterium TW-7
Length = 676
Score = 33.1 bits (72), Expect = 8.5
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = -3
Query: 437 VLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 258
V D H++D + + +N + E+ TP+G + + F ++ GP
Sbjct: 209 VSDLNDHQQDTQFLLDNIQPNFVYLEQQATPLGDNLNASQFTEQFNNLRSRLNGPDGIYA 268
Query: 257 TLRKSLR-VHTKRAALEKINLKFIDTSS------KFGHGRFQTPADKA 135
K+L+ + + E+ +FIDT S K RFQT + A
Sbjct: 269 QQNKALKNTQMAQQSFERFQQEFIDTESQLLQLNKLADERFQTLQNSA 316
>UniRef50_Q17U53 Cluster: DNA-directed RNA polymerase, putative;
n=1; Solanum bulbocastanum|Rep: DNA-directed RNA
polymerase, putative - Solanum bulbocastanum (Wild
potato)
Length = 1018
Score = 33.1 bits (72), Expect = 8.5
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 640 HWCHPRAKDTKVSLLVGT-QRSYPVRHTKGLRK 545
HWCHP + +VS +V T +R+ P++ T LRK
Sbjct: 498 HWCHPYKRMERVSGVVATLRRTNPLQMTADLRK 530
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.1 bits (72), Expect = 8.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 252 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSL 428
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL 508
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 8.5
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -3
Query: 320 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 195
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,530,612
Number of Sequences: 1657284
Number of extensions: 17485001
Number of successful extensions: 42153
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 40728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42125
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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