Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_O22
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 160 2e-40
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 160 2e-40
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 28 1.4
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 4.2
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 26 7.3
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.3
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 7.3
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 160 bits (388), Expect = 2e-40
Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*E-SCLHWSLASF*GVVHCSSC-WSERLSSPY*NE 453
+GKG +G T+RW TK+LPRKTH+G + +C+ G H ++ W+ +
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACI--------GAWHPANVQWTVARAGNAGYM 273
Query: 452 XRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
R L+ I++ NAST++D +EK ITPMGGF YG V NDFVM+ G GP
Sbjct: 274 HRTQ--LNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGP 331
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 332 VKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 65.3 bits (152), Expect = 1e-11
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = -1
Query: 592 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 455
GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = -2
Query: 732 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 160 bits (388), Expect = 2e-40
Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Frame = -3
Query: 626 KGKGYKGVTSRWHTKKLPRKTHQGS*E-SCLHWSLASF*GVVHCSSC-WSERLSSPY*NE 453
+GKG +G T+RW TK+LPRKTH+G + +C+ G H ++ W+ +
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACI--------GAWHPANVQWTVARAGNAGYM 273
Query: 452 XRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
R L+ I++ NAST++D +EK ITPMGGF YG V NDFVM+ G GP
Sbjct: 274 HRTQ--LNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGP 331
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 332 VKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 65.3 bits (152), Expect = 1e-11
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = -1
Query: 592 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 455
GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = -2
Query: 732 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 592 QREVTPLYPLPLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFV 723
Q ++ L P G T +V + G+ +D ++ Q +S FH V
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 442 LSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 347
L W++E KR+ KLL M L + C + +H
Sbjct: 337 LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 379 VDALFLITLPSFLWIPWSNTIDFLXSFQY 465
V LF I ++ W W+ DF +F Y
Sbjct: 220 VQILFSIPFLAYFWSYWTQAFDFGRAFDY 248
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 376 SVDALFLITLPSFLWIPW 429
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 707 PENIWRNLSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKT 564
PE W+ +SLS L LPK + Y SR H KLP++T
Sbjct: 631 PECRWQKVSLSELVLPKKVKI---------AYMKAVSRVHPDKLPQQT 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,936
Number of Sequences: 5004
Number of extensions: 73509
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -