Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_O17
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    32   0.46 
03_05_0183 - 21681673-21682524                                         29   4.3  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.3  
01_01_0613 - 4571689-4572348                                           29   4.3  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.7  

>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 469 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV*TATSVSATSPLC 648
           +F P+ P     LA  + GH R+ + D   +  S  G   + D +      +VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425

Query: 649 TLGTKHRAPADIIDR 693
            +   H AP  + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 345 SQAFIATLLFDPSMSALPIIAKQNSPS 265
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 406 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 299
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_01_0613 - 4571689-4572348
          Length = 219

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 514 LALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV*TATSVSATSPLCTLGTKHRAPADIID 690
           L LGH  YSL   PP S     +    D  GV +++S +AT+    +G + R+  +++D
Sbjct: 51  LELGHSVYSLPLPPPPSQPVVVAGGNNDQYGVSSSSSAAATT--SRIGFRTRSEVEVLD 107


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 639 TTLHAWNETPCARRYY 686
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,096,189
Number of Sequences: 37544
Number of extensions: 478052
Number of successful extensions: 1342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)