Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_O13
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.2  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    29   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    26   6.3  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 323 LTTRKLAERLGVQQPALYWHFRNKR 249
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 614 LESGGWIGPGVFYGGQNSVDGV 679
           L  GGW+ P ++Y G++SV  V
Sbjct: 103 LPYGGWVAPNIYYMGRSSVINV 124


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 618 SPEAGSVPVSSMEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTA 749
           S    S+P +S EVKTA  +S  ++    TSS       YTP +
Sbjct: 709 SSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPAS 752


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 755 ASMGRSCYDILESPLIWVPNNSIDVMGWRXE 847
           A+  R CY   ++  I + +N  DVM WR +
Sbjct: 6   ANQTRVCYQPEDTTFIIIASNGPDVMRWRKD 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,527
Number of Sequences: 5004
Number of extensions: 69623
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)