Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_O08
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    29   0.99 
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    27   3.0  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    27   3.0  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   9.3  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 163 RWSRASDRLTSSTVRNVINTGITGSWLSWS 74
           R + ASD LT    +N+ N   TGSWL WS
Sbjct: 138 RSTTASDILTKLGYKNIGN--YTGSWLEWS 165


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 154 RASDRLTSSTVRNVINTGITGS 89
           +  D+L +STVR V+  G TGS
Sbjct: 34  QVGDQLKASTVRRVVKVGATGS 55


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 665 KQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKW 525
           K+L+R S+      R  ++  +R+  HA+V      E  R+P+   W
Sbjct: 21  KKLKRLSKQGGVEGRLPMKRLFRQRAHANVLSDHELEYPRSPSEMDW 67


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 735 SSPWSVAEPPPNLIRF-VXNCG 673
           S+P +V++ PP++IRF V  CG
Sbjct: 129 SNPKNVSKEPPSVIRFGVKKCG 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,332
Number of Sequences: 5004
Number of extensions: 66748
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)