Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_O03
(787 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 33 0.28
At2g04970.1 68415.m00518 hypothetical protein similar to At2g152... 32 0.38
At4g02720.1 68417.m00368 expressed protein temporary automated f... 31 0.66
At5g64910.1 68418.m08165 expressed protein ; expression support... 31 1.1
At3g10820.1 68416.m01303 transcription elongation factor-related... 31 1.1
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 30 2.0
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen... 30 2.0
At4g40020.1 68417.m05666 hypothetical protein 29 3.5
At1g13920.1 68414.m01633 remorin family protein contains Pfam do... 29 3.5
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein... 29 4.6
At5g55820.1 68418.m06956 expressed protein 28 6.1
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 28 8.1
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:... 28 8.1
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 28 8.1
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = -3
Query: 263 KNRHRKRRGTKCRAGPQKRTCSEKNRCREKGGHRRLPIPERDLRQVLQRNQQY*ADKGQK 84
K R R + K G ++ ++NR +EK H + ER+ R+ L+R ++ +K ++
Sbjct: 110 KERDRSKENDK---GVEREHEGDRNRAKEKDRHEKQKERERE-REKLEREKEREREKIER 165
Query: 83 VEETKRERL 57
+E +RE++
Sbjct: 166 EKEREREKM 174
>At2g04970.1 68415.m00518 hypothetical protein similar to At2g15200,
At1g32830, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 808
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -1
Query: 415 QSRETS*FEEEVLQKLQKAQSHIEHDKTS-----VAPQAAAANDTEPDTKTAQRKRKIVT 251
Q E EEE + K + + H EHD+T V N T P K +Q +++ T
Sbjct: 557 QEEEGKEEEEEKVLKEESVEEHDEHDETEDQEAYVILSDDEDNGTTPTEKESQPQKEETT 616
Query: 250 ENAEEQNV 227
E +E+NV
Sbjct: 617 EVPKEENV 624
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = -1
Query: 451 RYQRNGSQSGGHQSRETS*FEEEVL--QKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKT 278
R +R S S +SR + F ++ +K + + S D+ S A +A+++ E DTK+
Sbjct: 149 RRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASSSGEEEDTKS 208
Query: 277 AQRKRKIVTENAEEQNVGRAHKN 209
++RK ++++ +++ G K+
Sbjct: 209 KSKRRKKSSDSSSKRSKGEKTKS 231
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = -1
Query: 457 SQRYQRNGSQSGGHQSRETS*FEEEVLQKLQKAQSHIEHDKT-SVAPQAAAANDTEPDTK 281
S+ + G++ + +E EE + ++ + ++ D++ S +A A+ +EP +
Sbjct: 84 SKAAEEGGNEEEAKEDKEEE-KEEAAREDKEEEEEAVKPDESASQKEEAKGASSSEPQLR 142
Query: 280 TAQRKRKIVTENAEEQNVGRAHKNEHVPK 194
+RKR TE ++ + RA K K
Sbjct: 143 RGKRKRGTKTEAEKKVSTPRAKKRAKTTK 171
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = -1
Query: 463 GNSQRYQRNGSQSGGHQS---RETS*FEEEVLQKLQKAQSHIE-HDKT-SVAPQAAAAND 299
G S+ R G ++G S + + E Q+ Q Q E DK S AP+ N+
Sbjct: 9 GGSRGGSRGGRKTGASSSASKNDDAVVEATTTQETQPTQETEETEDKVESPAPEEEGKNE 68
Query: 298 TEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKE 170
E + + K+ ++ AEE K + +K + A+++
Sbjct: 69 EEANENQEEEAAKVESKAAEEGGNEEEAKEDKEEEKEEAARED 111
>At3g10820.1 68416.m01303 transcription elongation factor-related
low similarity to transcription elongation factor
TFIIS.h [Mus musculus] GI:3288547
Length = 416
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = -1
Query: 409 RETS*FEEEVLQKLQKAQSHIEHDKTSVA-PQAAAANDTEPDTKTAQRKRKIVTENAEEQ 233
R+T E+++ +Q+ + + K +A PQ +PD+K KRK+ + +
Sbjct: 325 RQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPDSKFEFAKRKLQESYHQHE 384
Query: 232 NVGRAHK---NEHVPKKIDVAKKEV 167
N R E +PK+ V K ++
Sbjct: 385 NAKRQRTIQVLETIPKQNKVQKPQL 409
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 478 DSCSGGNSQRYQRNGSQSGGHQSRETS*FEEEVLQKLQKAQSHI 347
D GG + R + GGH SR S + + K QK SH+
Sbjct: 52 DELIGGGFSLHARRPNAHGGHGSRPNSSALQPISNKAQKLTSHV 95
>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 537
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 478 DSCSGGNSQRYQRNGSQSGGHQSRETS*FEEEVLQKLQKAQSHI 347
D GG + R + GGH SR S + + K QK SH+
Sbjct: 53 DELIGGGFSLHARRPNAHGGHGSRPNSSSLQPISNKAQKLTSHV 96
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 274 QRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVT 164
+ K++ EN +E+ + K EH KK D KKE T
Sbjct: 401 KEKKEEKKENKKEKKESKKEKKEHSEKKEDKEKKEQT 437
>At1g13920.1 68414.m01633 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 345
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 315 PPPLMTPSPIRKRPNGNEK-SSPKTQR 238
PPPL++PSP+R P ++ SS T R
Sbjct: 208 PPPLLSPSPLRLPPRETKRQSSEHTSR 234
>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 457
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = -1
Query: 469 SGGNSQRYQRNGSQSGGHQSRETS*FEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEP 290
+GG+ N Q+ G S +S + ++ + + + + ++ D TS A + + D E
Sbjct: 336 TGGDEILSSCNDLQTYGEPSISSSTRQSQLTRSIIRPKQEVKQD-TSRAVDSDTSIDKES 394
Query: 289 DTKTAQRKRKIVTENAEEQN 230
++K +TE A E+N
Sbjct: 395 SMVKTEKKSWFITEEAMERN 414
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -1
Query: 391 EEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHK 212
E+E L+K + + E D+ + A + E K +RKRK E + R +
Sbjct: 1554 EQENLKKQEIEKKKKEEDRKKKEAEMAWKQEMEKKKKEEERKRK------EFEMADRKRQ 1607
Query: 211 NEHVPKKIDVAKK-EVTAGYQYQNATYDK 128
E K++ AKK + A +Q Q D+
Sbjct: 1608 REEEDKRLKEAKKRQRIADFQRQQREADE 1636
>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
(PPR) repeat-containing protein contains Pfam profiles:
PF03016 exostosin family, PF01535 PPR repeat
Length = 1388
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 513 FVPPYSRYVNYRTLAQEEIAKDIKEMEAKVAAISP 409
+VPP+S +N+R+ + +DI ++ + +ISP
Sbjct: 1306 YVPPFSDVLNWRSFSVIVSVEDIPNLKTILTSISP 1340
>At4g33200.1 68417.m04727 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]
Length = 1522
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -1
Query: 379 LQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHV 200
LQKL++A+ +TSV + E + + +K I + Q +G H + V
Sbjct: 1019 LQKLKEAEKRCSELQTSVQSLEEKLSHLENENQVLMQKTLITSPERIGQILGEKHSSAVV 1078
Query: 199 PKKID 185
P + D
Sbjct: 1079 PAQND 1083
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 442 RNGSQSGGHQSRETS*FEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKR 263
R G + + SRE E++V ++A+ E +KT QA + E + K +R+R
Sbjct: 487 REGDHTENYDSRERELREKQVRLDRERAEREAEMEKT----QAREREEREREQKRIERER 542
Query: 262 -KIVTENAEEQNVGRAHK 212
+++ A E+ A +
Sbjct: 543 ERLLARQAVERATREARE 560
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,193,802
Number of Sequences: 28952
Number of extensions: 223873
Number of successful extensions: 974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -