Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_O02
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   134   6e-32
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   129   2e-30
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   113   1e-25
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.38 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.2  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.7  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    29   4.7  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  134 bits (324), Expect = 6e-32
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = -1

Query: 624 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 445
           EPRLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 181

Query: 444 LAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           LAR VL++RG +   Q+WDV+VDLFFYR P
Sbjct: 182 LARMVLQMRGTIAAGQKWDVMVDLFFYREP 211



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = -2

Query: 782 VAIENPADVXVXSSRPFGQRAVLKFAAHTRXYAYCGTFHT 663
           VAIENP D+ V S+RP+GQRAVLKFA +T   A  G  HT
Sbjct: 70  VAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGR-HT 108



 Score = 34.3 bits (75), Expect = 0.095
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 694 GXTPIAGRFTPGAFTNQIQAAF 629
           G   IAGR TPG FTNQ+Q +F
Sbjct: 99  GANAIAGRHTPGTFTNQMQTSF 120


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/90 (63%), Positives = 68/90 (75%)
 Frame = -1

Query: 624 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 445
           EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WL
Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182

Query: 444 LAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           LAR VL++RG +   Q+WDV+VDLFFYR P
Sbjct: 183 LARMVLQMRGTILAAQKWDVMVDLFFYREP 212



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = -2

Query: 782 VAIENPADVXVXSSRPFGQRAVLKFAAHTRXYAYCGTFHT 663
           VAIENP D+ V S+RP+GQRAVLKFA +T   A  G  HT
Sbjct: 71  VAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGR-HT 109



 Score = 34.3 bits (75), Expect = 0.095
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 694 GXTPIAGRFTPGAFTNQIQAAF 629
           G   IAGR TPG FTNQ+Q +F
Sbjct: 100 GVNAIAGRHTPGTFTNQMQTSF 121


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  113 bits (272), Expect = 1e-25
 Identities = 50/83 (60%), Positives = 62/83 (74%)
 Frame = -1

Query: 624 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 445
           EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WL
Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182

Query: 444 LAREVLRLRGVLPRDQRWDVVVD 376
           LAR VL++RG +   Q+WDV+V+
Sbjct: 183 LARMVLQMRGTILAAQKWDVMVN 205



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = -2

Query: 782 VAIENPADVXVXSSRPFGQRAVLKFAAHTRXYAYCGTFHT 663
           VAIENP D+ V S+RP+GQRAVLKFA +T   A  G  HT
Sbjct: 71  VAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGR-HT 109



 Score = 34.3 bits (75), Expect = 0.095
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 694 GXTPIAGRFTPGAFTNQIQAAF 629
           G   IAGR TPG FTNQ+Q +F
Sbjct: 100 GVNAIAGRHTPGTFTNQMQTSF 121


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 472
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 340 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 227
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 582 DGLVQGPIQSRDEVHGNAAWIWLVKAPGVKRPAIGVXPGVRGKLQYS 722
           +GL    ++ RD++ G   W+ LV A     PAIGV P      QY+
Sbjct: 209 EGLSDFSLEKRDDLPGMLKWLALV-ATSPHDPAIGVIPHSSKWKQYN 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,842
Number of Sequences: 28952
Number of extensions: 326292
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)