Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_N24
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80845-2|AAK39179.2| 582|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 30 2.3
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 30 2.3
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 29 5.2
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 5.2
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 24 6.5
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 28 6.9
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 28 6.9
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 6.9
U67954-4|AAM54180.1| 345|Caenorhabditis elegans Wrapper/rega-1/... 28 9.1
AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical ... 28 9.1
AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobuli... 28 9.1
AF023454-1|AAB82794.1| 707|Caenorhabditis elegans protein phosp... 28 9.1
AF003389-11|AAC71139.2| 707|Caenorhabditis elegans Phosphatase ... 28 9.1
>U80845-2|AAK39179.2| 582|Caenorhabditis elegans Hypothetical
protein C24A8.1 protein.
Length = 582
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 424 TSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIAR 555
TS RR+SH + NRE ++S LH +L PP E R++ R
Sbjct: 334 TSRKRRHSHQPQGNREVVTSEESKKLH--SLKPPL-VEKRKMRR 374
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 389 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 389 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 322 PATCTD-SQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 438
PAT T+ S + PP TA + + NF+G+ S+TR
Sbjct: 209 PATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +2
Query: 386 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 559
LP TT+ T+ P + + +KPT T T K P T P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 24.2 bits (50), Expect(2) = 6.5
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 464 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 559
T C +T T TC+ NP T S T
Sbjct: 83 TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114
Score = 22.6 bits (46), Expect(2) = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 314 SHVRLPVQTHKTFYHHANFLPQQILPATTQTTI 412
S + + V +TF L QQ+L TT+T++
Sbjct: 10 SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 RDLVVWRTRRPASXTVEAICP 278
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 RDLVVWRTRRPASXTVEAICP 278
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 121 GPATAQCPTRRRTL-AQVQPERGAPISAVRAGG 216
GP A CP RTL A PE G +A AGG
Sbjct: 292 GPDAAYCPCPPRTLGAGAYPEGGDAAAAAPAGG 324
>U67954-4|AAM54180.1| 345|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform c
protein.
Length = 345
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 374 VRSLHGGKMSCESVQVAGRETSAVAAHPVRENRADRLDGXGGRPTGPP 231
V+ H GK +C + +AG + + + H + +R GRP GPP
Sbjct: 177 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 219
>AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical
protein Y48C3A.12 protein.
Length = 675
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 374 PQQILPATTQTTILRV-PPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P + PA + T+ PP+ + P+L +PT Q S + + + +N AA+
Sbjct: 250 PAPVAPAPSIETLTSTSPPVTQQLAPSLSEPTFQVIQTEESKNMSMDSV---KNVVDAAA 306
Query: 551 PDTNAPDVLSYRS*RLQNV 607
AP LS +S RL +V
Sbjct: 307 LSAPAPAPLS-QSDRLNHV 324
>AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1C protein.
Length = 344
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 374 VRSLHGGKMSCESVQVAGRETSAVAAHPVRENRADRLDGXGGRPTGPP 231
V+ H GK +C + +AG + + + H + +R GRP GPP
Sbjct: 176 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 218
>AF023454-1|AAB82794.1| 707|Caenorhabditis elegans protein
phosphatase with EF-hands protein.
Length = 707
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 340 SQDILPPCKLLTATNLTSHHANYNFTG--STSLTRRYSHTEEANREHLSSTHKHALHRKN 513
S ++ + T T +S NYN ++S + + ++++H S K + +KN
Sbjct: 13 STELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSKKN 72
Query: 514 LHPPAEPE 537
P +P+
Sbjct: 73 RSPSPQPQ 80
>AF003389-11|AAC71139.2| 707|Caenorhabditis elegans Phosphatase
with ef hands protein1, isoform a protein.
Length = 707
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 340 SQDILPPCKLLTATNLTSHHANYNFTG--STSLTRRYSHTEEANREHLSSTHKHALHRKN 513
S ++ + T T +S NYN ++S + + ++++H S K + +KN
Sbjct: 13 STELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSKKN 72
Query: 514 LHPPAEPE 537
P +P+
Sbjct: 73 RSPSPQPQ 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,453
Number of Sequences: 27780
Number of extensions: 373789
Number of successful extensions: 1244
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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