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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N20
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)              31   1.4  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   3.3  
SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)                   29   4.4  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                29   4.4  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   5.8  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_48982| Best HMM Match : HEAT (HMM E-Value=0.78)                     29   5.8  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               29   5.8  
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    28   7.7  
SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16)                  28   7.7  
SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16)                  28   7.7  

>SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 267 RPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAGS 407
           + AD     N +L NVG+L  +   A Q+  L  ++  +DQNQ AGS
Sbjct: 207 KAADCRCSKNHQLKNVGKLDISRSAANQSKHLEKQSLQVDQNQRAGS 253


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIP 378
           G P   + P GA HPK   P  P +R+  S      +  P GPP +    PG P
Sbjct: 585 GTPHPRVPPPGAPHPKVPPPGAPYQRLPYSGAYHPRL-PPPGPPYQRVPPPGAP 637



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/63 (33%), Positives = 24/63 (38%)
 Frame = +1

Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTS 396
           G P   + P GA HP+   P  P  R+     S   V  P  P  R    PG P   R  
Sbjct: 525 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVP-PPGAPH-PRVP 582

Query: 397 LPG 405
            PG
Sbjct: 583 PPG 585



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +1

Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTS 396
           G P   + P GA HP+   P  P  R+         V  P  P +R    PG P   R  
Sbjct: 455 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVP-PPGAPH-PRVP 512

Query: 397 LPG 405
            PG
Sbjct: 513 PPG 515



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +1

Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTS 396
           G P   + P GA HP+   P  P +R+         V  P  P  R    PG P   R  
Sbjct: 475 GAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVP-PPGAPH-PRVP 532

Query: 397 LPG 405
            PG
Sbjct: 533 PPG 535


>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 622

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDG 334
           P +Q    P GY G P+AP G P G
Sbjct: 429 PPQQPSYPPGGYGGPPSAPYGAPPG 453


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 180 RSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADG 281
           R PPR  P  GRGA         RG P+G P  G
Sbjct: 76  RGPPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPG 109


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 387  GPAGYSGTPAAPSGRPDGLPYRDGRR 310
            G  GY G PA P GR DG+P   GR+
Sbjct: 1853 GWKGYPGNPAGPPGR-DGIPGPPGRQ 1877


>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
          Length = 351

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 520 GGGRHLQGPGRTGVFPPPAPGLDGDGSVRKGKSSPSLAP 636
           GGG   + PG  G  P  APG  G  +  KG+ S S  P
Sbjct: 20  GGGSPTEAPGGGGGSPTEAPG-GGGSTPTKGEGSTSPTP 57


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +3

Query: 180 RSPPRSEPG*GRGATAVNTTT-RRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQT 353
           R+PP   P         +T T RRR   + R  +    + RR  + +GR+ T  +   + 
Sbjct: 324 RTPPSFTPRSSISRRRSDTPTKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRR 383

Query: 354 VPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 449
           V L+   T      PAGS R + S+  S  ST
Sbjct: 384 VNLLEAFTAAAAGTPAGSRRSSSSSRSSLPST 415


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +3

Query: 258  PQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAG-SGRDTPSTG 431
            P  RP  G  EA RRL    R+  A + A + V           ++P G    D PS G
Sbjct: 1858 PATRPHPGRVEAGRRLAKWNRINRAKKEALRVVSAQQLPVAPGPSEPQGLRSDDAPSAG 1916


>SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313
           P G+SG PAAP+  PD L Y D +
Sbjct: 264 PGGHSGAPAAPAIGPDSL-YGDNK 286


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 237 TTRRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGR 413
           T RRR   + R  +    + RR  + +GR+ T  +   + V L+   T      PAGS R
Sbjct: 631 TKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRRVNLLEAFTAAAAGTPAGSRR 690

Query: 414 DTPSTGRSN 440
            + S+ RS+
Sbjct: 691 RSSSSSRSS 699


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 353  RLGGPT---GCRTETADVSEPSIRLEGSVGWASLG*AAPSGCSVDRGSP-PTSSGF*PRR 186
            ++GG T   G  +ET+D S+PS+    ++G+  +  + P   +    SP  TSS   P  
Sbjct: 2014 KIGGATIKFGVSSETSDASKPSVADAAALGFLKVPASTPPDTTPSASSPADTSSSSKPSI 2073

Query: 185  G 183
            G
Sbjct: 2074 G 2074


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 244 DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 360
           DG   P   QPT+    I+   T     + P GPP  C+
Sbjct: 70  DGITSPNHTQPTQVLPTIQPPPTHPYRQQGPAGPPVTCQ 108


>SB_48982| Best HMM Match : HEAT (HMM E-Value=0.78)
          Length = 390

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 181 DPLRGQNPDEVGGLPRSTLQP---DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVG 342
           DP++G  P++     ++ L     DG  H  D +PTE  RRIE  +    ++R+  G
Sbjct: 317 DPVKGFLPNDEPATRKNPLYRSIFDGFDHI-DGKPTESERRIEALQAQLQALREMAG 372


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 196 QNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGS 306
           Q P      P+ + QP+  + P+  QP++P    + S
Sbjct: 813 QTPQGTSAQPKPSQQPNSTSEPRPQQPSQPKSSAQAS 849


>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 181 DPLRGQNPDEVGGLPRSTLQP---DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVG 342
           DP++G  P++     ++ L     DG  H  D +PTE  RRIE  +    ++R+  G
Sbjct: 730 DPVKGFLPNDEPATRKNPLYRSIFDGFDHI-DGKPTESERRIEALQAQLQALREMAG 785


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 316
           P    G G  G  G PA P G P+GLP  +G
Sbjct: 239 PGNPGGPGYQGNHGNPAGPQG-PNGLPGPNG 268


>SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
          Length = 591

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313
           P G+SGTPAAP+  P+   Y D +
Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354


>SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313
           P G+SG PAAP+  P+ L Y D +
Sbjct: 210 PGGHSGAPAAPAVNPESL-YGDNK 232


>SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
          Length = 591

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313
           P G+SGTPAAP+  P+   Y D +
Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.137    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,717,707
Number of Sequences: 59808
Number of extensions: 456244
Number of successful extensions: 1624
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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