BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_N20 (802 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47 SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1 SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 31 1.4 SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5 SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 3.3 SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19) 29 4.4 SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 4.4 SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8 SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8 SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 29 5.8 SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8 SB_48982| Best HMM Match : HEAT (HMM E-Value=0.78) 29 5.8 SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 29 5.8 SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 7.7 SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 7.7 SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 7.7 >SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 534 Score = 32.3 bits (70), Expect = 0.47 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 267 RPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAGS 407 + AD N +L NVG+L + A Q+ L ++ +DQNQ AGS Sbjct: 207 KAADCRCSKNHQLKNVGKLDISRSAANQSKHLEKQSLQVDQNQRAGS 253 >SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1572 Score = 31.1 bits (67), Expect = 1.1 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +1 Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIP 378 G P + P GA HPK P P +R+ S + P GPP + PG P Sbjct: 585 GTPHPRVPPPGAPHPKVPPPGAPYQRLPYSGAYHPRL-PPPGPPYQRVPPPGAP 637 Score = 29.5 bits (63), Expect = 3.3 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = +1 Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTS 396 G P + P GA HP+ P P R+ S V P P R PG P R Sbjct: 525 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVP-PPGAPH-PRVP 582 Query: 397 LPG 405 PG Sbjct: 583 PPG 585 Score = 28.7 bits (61), Expect = 5.8 Identities = 20/63 (31%), Positives = 24/63 (38%) Frame = +1 Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTS 396 G P + P GA HP+ P P R+ V P P +R PG P R Sbjct: 455 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVP-PPGAPH-PRVP 512 Query: 397 LPG 405 PG Sbjct: 513 PPG 515 Score = 28.7 bits (61), Expect = 5.8 Identities = 20/63 (31%), Positives = 24/63 (38%) Frame = +1 Query: 217 GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTS 396 G P + P GA HP+ P P +R+ V P P R PG P R Sbjct: 475 GAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVP-PPGAPH-PRVP 532 Query: 397 LPG 405 PG Sbjct: 533 PPG 535 >SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) Length = 622 Score = 30.7 bits (66), Expect = 1.4 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDG 334 P +Q P GY G P+AP G P G Sbjct: 429 PPQQPSYPPGGYGGPPSAPYGAPPG 453 >SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 414 Score = 29.9 bits (64), Expect = 2.5 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = +3 Query: 180 RSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADG 281 R PPR P GRGA RG P+G P G Sbjct: 76 RGPPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPG 109 >SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) Length = 1903 Score = 29.5 bits (63), Expect = 3.3 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -2 Query: 387 GPAGYSGTPAAPSGRPDGLPYRDGRR 310 G GY G PA P GR DG+P GR+ Sbjct: 1853 GWKGYPGNPAGPPGR-DGIPGPPGRQ 1877 >SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19) Length = 351 Score = 29.1 bits (62), Expect = 4.4 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +1 Query: 520 GGGRHLQGPGRTGVFPPPAPGLDGDGSVRKGKSSPSLAP 636 GGG + PG G P APG G + KG+ S S P Sbjct: 20 GGGSPTEAPGGGGGSPTEAPG-GGGSTPTKGEGSTSPTP 57 >SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) Length = 493 Score = 29.1 bits (62), Expect = 4.4 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +3 Query: 180 RSPPRSEPG*GRGATAVNTTT-RRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQT 353 R+PP P +T T RRR + R + + RR + +GR+ T + + Sbjct: 324 RTPPSFTPRSSISRRRSDTPTKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRR 383 Query: 354 VPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 449 V L+ T PAGS R + S+ S ST Sbjct: 384 VNLLEAFTAAAAGTPAGSRRSSSSSRSSLPST 415 >SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2235 Score = 29.1 bits (62), Expect = 4.4 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Frame = +3 Query: 258 PQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAG-SGRDTPSTG 431 P RP G EA RRL R+ A + A + V ++P G D PS G Sbjct: 1858 PATRPHPGRVEAGRRLAKWNRINRAKKEALRVVSAQQLPVAPGPSEPQGLRSDDAPSAG 1916 >SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 299 Score = 28.7 bits (61), Expect = 5.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313 P G+SG PAAP+ PD L Y D + Sbjct: 264 PGGHSGAPAAPAIGPDSL-YGDNK 286 >SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 799 Score = 28.7 bits (61), Expect = 5.8 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +3 Query: 237 TTRRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGR 413 T RRR + R + + RR + +GR+ T + + V L+ T PAGS R Sbjct: 631 TKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRRVNLLEAFTAAAAGTPAGSRR 690 Query: 414 DTPSTGRSN 440 + S+ RS+ Sbjct: 691 RSSSSSRSS 699 >SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) Length = 2442 Score = 28.7 bits (61), Expect = 5.8 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = -3 Query: 353 RLGGPT---GCRTETADVSEPSIRLEGSVGWASLG*AAPSGCSVDRGSP-PTSSGF*PRR 186 ++GG T G +ET+D S+PS+ ++G+ + + P + SP TSS P Sbjct: 2014 KIGGATIKFGVSSETSDASKPSVADAAALGFLKVPASTPPDTTPSASSPADTSSSSKPSI 2073 Query: 185 G 183 G Sbjct: 2074 G 2074 >SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1199 Score = 28.7 bits (61), Expect = 5.8 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = +1 Query: 244 DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 360 DG P QPT+ I+ T + P GPP C+ Sbjct: 70 DGITSPNHTQPTQVLPTIQPPPTHPYRQQGPAGPPVTCQ 108 >SB_48982| Best HMM Match : HEAT (HMM E-Value=0.78) Length = 390 Score = 28.7 bits (61), Expect = 5.8 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +1 Query: 181 DPLRGQNPDEVGGLPRSTLQP---DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVG 342 DP++G P++ ++ L DG H D +PTE RRIE + ++R+ G Sbjct: 317 DPVKGFLPNDEPATRKNPLYRSIFDGFDHI-DGKPTESERRIEALQAQLQALREMAG 372 >SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) Length = 4240 Score = 28.7 bits (61), Expect = 5.8 Identities = 10/37 (27%), Positives = 18/37 (48%) Frame = +1 Query: 196 QNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGS 306 Q P P+ + QP+ + P+ QP++P + S Sbjct: 813 QTPQGTSAQPKPSQQPNSTSEPRPQQPSQPKSSAQAS 849 >SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 949 Score = 28.7 bits (61), Expect = 5.8 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +1 Query: 181 DPLRGQNPDEVGGLPRSTLQP---DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVG 342 DP++G P++ ++ L DG H D +PTE RRIE + ++R+ G Sbjct: 730 DPVKGFLPNDEPATRKNPLYRSIFDGFDHI-DGKPTESERRIEALQAQLQALREMAG 785 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 28.3 bits (60), Expect = 7.7 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -2 Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 316 P G G G G PA P G P+GLP +G Sbjct: 239 PGNPGGPGYQGNHGNPAGPQG-PNGLPGPNG 268 >SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16) Length = 591 Score = 28.3 bits (60), Expect = 7.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313 P G+SGTPAAP+ P+ Y D + Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354 >SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 502 Score = 28.3 bits (60), Expect = 7.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313 P G+SG PAAP+ P+ L Y D + Sbjct: 210 PGGHSGAPAAPAVNPESL-YGDNK 232 >SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16) Length = 591 Score = 28.3 bits (60), Expect = 7.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 384 PAGYSGTPAAPSGRPDGLPYRDGR 313 P G+SGTPAAP+ P+ Y D + Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.316 0.137 0.453 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,717,707 Number of Sequences: 59808 Number of extensions: 456244 Number of successful extensions: 1624 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1612 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2215746665 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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