Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_N20
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10660.4 68414.m01211 expressed protein 33 0.29
At1g10660.3 68414.m01210 expressed protein 33 0.29
At1g10660.2 68414.m01209 expressed protein 33 0.29
At1g10660.1 68414.m01208 expressed protein 33 0.29
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 32 0.39
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,... 29 2.7
At2g26530.1 68415.m03183 expressed protein 28 6.3
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 28 8.3
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 28 8.3
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 28 8.3
>At1g10660.4 68414.m01211 expressed protein
Length = 320
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 541 GPGRTGVFPPPAPGLDGDGSVRKGKSSPSLAPXXXSAKWW 660
G G + PP LDG+G+ K + PS AP +A +W
Sbjct: 144 GDTEQGTYRPPI-ALDGEGNTSKASNRPSEAPARKTAGFW 182
>At1g10660.3 68414.m01210 expressed protein
Length = 320
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 541 GPGRTGVFPPPAPGLDGDGSVRKGKSSPSLAPXXXSAKWW 660
G G + PP LDG+G+ K + PS AP +A +W
Sbjct: 144 GDTEQGTYRPPI-ALDGEGNTSKASNRPSEAPARKTAGFW 182
>At1g10660.2 68414.m01209 expressed protein
Length = 320
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 541 GPGRTGVFPPPAPGLDGDGSVRKGKSSPSLAPXXXSAKWW 660
G G + PP LDG+G+ K + PS AP +A +W
Sbjct: 144 GDTEQGTYRPPI-ALDGEGNTSKASNRPSEAPARKTAGFW 182
>At1g10660.1 68414.m01208 expressed protein
Length = 320
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 541 GPGRTGVFPPPAPGLDGDGSVRKGKSSPSLAPXXXSAKWW 660
G G + PP LDG+G+ K + PS AP +A +W
Sbjct: 144 GDTEQGTYRPPI-ALDGEGNTSKASNRPSEAPARKTAGFW 182
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 139 WVLKSLGPRSAHNTMQIVESHIPRAPLLRGDLVGGSALYPKKK 11
WVLKS G + T ++ES P A +L + G +A+Y +K
Sbjct: 465 WVLKSHGGNTGFTTESLMESGYPDASVLGESICGMAAVYISEK 507
>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 609
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 476 AARPHPLRSPLDLHRGEAATYRGRDVRAYSRLRPPGSTATDRC 604
A P P +P + + + T R R + SR R P T T RC
Sbjct: 20 ATSPRPPLAPSEKNNVGSVTRRARTMEVSSRYRSPTPTKTRRC 62
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -1
Query: 196 DLGGDRTSGVRVXGESFSGWVLKSLGPR-----SAHNTMQIVESHIPRAPLLRGDLVGGS 32
++GG + E F G +K L P H+ QI+ PR+P+ G +
Sbjct: 77 EIGGKLETTSLFAEELFDGGKIKPLKPPPYLQLDHHHQPQILSPRSPRSPIAHGKNIIRK 136
Query: 31 ALYPKKK 11
A P+KK
Sbjct: 137 AFSPRKK 143
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +1
Query: 262 KDAQPTEPSRRIEGSETSAVSVRQPV 339
++++PTE S++I+ + ++ VS R+PV
Sbjct: 488 EESEPTETSKKIQPTSSAMVSSRKPV 513
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +1
Query: 262 KDAQPTEPSRRIEGSETSAVSVRQPV 339
++++PTE S++I+ + ++ VS R+PV
Sbjct: 511 EESEPTETSKKIQPTSSAMVSSRKPV 536
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 25 RGPNLLRGPRAKGARGVCETQRSAWCCEQTAGPR 126
RGP GP ++G RG ++ +A TAG +
Sbjct: 155 RGPTTRTGPASRGGRGGATSKSTAGARSSTAGKK 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.137 0.453
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,917
Number of Sequences: 28952
Number of extensions: 296286
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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