Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_N19
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 33 0.34
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 30 1.8
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 4.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 29 5.5
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 28 7.3
11_06_0610 - 25449085-25453284 28 9.6
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.6
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 32.7 bits (71), Expect = 0.34
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = -3
Query: 716 LCIXPPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPG*SLRCHQRL 546
L I PSPAI+ T ++N +H P DL+ P T EF+PG + +CH+++
Sbjct: 329 LHIDQPSPAIANTIQVATNQLYH-PQQVDLSKEK-QPST----EFSPGQNSKCHKKV 379
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 746 PFAXILAVSPLCIXPPSPAISGTSTRSSNPXFHTPTTPD 630
P + + SP + P +PA S +S SS+P TP + D
Sbjct: 318 PTSPSVPSSPQSVVPSNPAASSSSVASSSPALATPESRD 356
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -3
Query: 710 IXPPSPAISGTSTR-SSNP--XFHTPTTPDLTSISINPLTP 597
I PPSPA + S+R S +P F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 692 AISGTSTRSSNPXFHTPTTP 633
A S T+TR S P H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>02_01_0121 +
890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 627 NIHFHQSPDAVLEGVRAGVKPPLSSEAPSAY 535
N FH+ A V A + PP S APS +
Sbjct: 127 NFEFHKERGASARSVTAAIVPPFSKPAPSKW 157
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 704 PPSPAISGTSTRSSNPXFHTPTTPDLTSIS-INPLTPY*KEFAP 576
PP+P +S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,488,520
Number of Sequences: 37544
Number of extensions: 476543
Number of successful extensions: 1461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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