Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N19
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         30   2.4  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.2  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     29   4.2  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   4.2  
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)                  29   4.2  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.2  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.6  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)                        28   7.4  
SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)             28   7.4  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -3

Query: 674 TRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPG*SLRCHQRLHQRISP-PRHWAWXKGF 498
           TR   P  HTP TP  T            E+    + R H RLH  ++P P H  +   +
Sbjct: 56  TRRVRPLLHTPVTPKPTHAEYTHAEYTHAEYTHAYTRRVHPRLHTPVTPTPTHAEYTHAY 115

Query: 497 RP 492
            P
Sbjct: 116 TP 117


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
 Frame = -1

Query: 712 ASXHPPLRFRVHQPDHQIPDSIHQPPQT*HPF-PSI-PXXXXXXXXXRGKASVVIRGSIS 539
           ++ HP +  R   P     DSI   P   HP  PS  P             S    GS  
Sbjct: 235 STAHPDMSLRTRHPSRSSEDSIENSPTELHPLDPSTSPNKPSRRQRFHSSDSTSSLGSPQ 294

Query: 538 VSHPLVTG 515
            SH L TG
Sbjct: 295 ESHALPTG 302


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 701 PSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTP 597
           P+PA + T T+ + P  HTPTTP  T+ +    TP
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTPTPTAHTPTKPTP 127


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 704 PPSPAISGTSTRSSNPXF-HTPTTPDLTSISINPLTP 597
           P +P+   T +  S P   HTP+TP   S    P TP
Sbjct: 434 PSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTP 470



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 704 PPSPAISGTSTRSSNPXF-HTPTTPDLTSISINPLTP 597
           P +P+   T +  S P   HTP+TP   S    P TP
Sbjct: 658 PSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTP 694



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 704 PPSPAISGTSTRSSNPXF-HTPTTPDLTSISINPLTP 597
           P +P+   T +  S P   +TP+TP   S    P+TP
Sbjct: 679 PSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITP 715



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 755 PLXPFAXILAVSPLCIXPPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTP 597
           P  P A    ++P  +  PS   S  STRS+     TP+TP   S+   P  P
Sbjct: 171 PSTPSAPGTPITPSTLSTPSTP-STPSTRSTPSTPSTPSTPSTLSMPSTPSMP 222



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 704 PPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTP 597
           P +P+   T +  S P   TP+TP LT     P TP
Sbjct: 652 PSTPSTPSTPSTPSTPS--TPSTPSLTHTPSTPSTP 685



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 755 PLXPFAXILAVSPLCIXPPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTP 597
           P  P A    ++P  +  PS   S  STRS+     TP+TP   S+   P  P
Sbjct: 721 PSTPSAPGTPITPSTLSTPSTP-STPSTRSTPSTPSTPSTPSTLSMPSTPSMP 772


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 57
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S     ++  + 
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349

Query: 56   LHSFGL 39
            + S GL
Sbjct: 2350 MSSSGL 2355


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -2

Query: 711  HQXTLPCDFGYINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVRAGVKPPLSSEAPSAYL 532
            ++ TLP    +I+   +  +P    P   +  +Q+P+++L      V PP    AP+A  
Sbjct: 1457 NKETLPGQSVHIDST-QEEVPVEAQPESRVDQNQTPESLLPAEYL-VAPPEEQPAPAAEP 1514

Query: 531  TPSSLGMXKGVSP 493
             PS  G    +SP
Sbjct: 1515 EPSPGGSPSDLSP 1527


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 731 LAVSPLCIXPPSPAIS-GTSTRSSNPXFHTPTTPDLTSISIN 609
           +A++ + + PP PAIS G S +S +P F  P T    S S++
Sbjct: 855 IALTGIDLEPPPPAISKGLSLKSRDPNFIQPFTAPQKSRSLS 896


>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
          Length = 944

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -2

Query: 711 HQXTLPCDFGYINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVRAGVKPPLSSEAPSAYL 532
           ++ TLP    +I+   +  +P    P   +  +Q+P+++L      V PP    AP+A  
Sbjct: 352 NKETLPGQSVHIDST-QEEVPVEAQPESRVDQNQTPESLLPAEYL-VAPPEEQPAPAAEP 409

Query: 531 TPSSLGMXKGVSP 493
            PS  G    +SP
Sbjct: 410 EPSPGGSPSDLSP 422


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 90
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 356 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 186
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 185 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 72
           +  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 442
            P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1103 PTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 90
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 647 TPTTPDLTSISINPLTPY 594
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)
          Length = 335

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 692 AISGTSTRSSNPXFHTPTTPDLTSISINPLTP 597
           AI  T   +  P  H P+ P+LT + + P+ P
Sbjct: 119 AIENTFEAAKKPIHHHPSKPNLTPVEVLPVFP 150


>SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)
          Length = 647

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -2

Query: 753 PXSFCXNIGGFALMHQXTLPCDFGYINPIIKSXIPYTNHPRLNIH--FHQSPDAVLEGVR 580
           P      IG F+ MH      +F  +    K+       P ++I   ++ +   +LEG  
Sbjct: 110 PMYVVPEIGAFSSMHY-----EFPVVREWFKTSSEVQKFPDVHIQGLYNVTVSEILEGPE 164

Query: 579 AGVKPPLSSEAPSAY 535
           A V+P L++E P  +
Sbjct: 165 AAVQPGLTTEVPQGW 179


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 404  PLIEDVVMATNQAIIDYKVKIADNNLVTHKE 312
            P + +V  A N+ +    V I DNN+V   E
Sbjct: 2469 PAVVEVTFAANEVVATISVPIVDNNIVEETE 2499


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 744  FCXNIGGFALMHQXTLPCDF--GYINPIIKSXIPYTNHPRLNIHFHQSPDAVLE 589
            FC  I G  ++HQ  L   F   +   +++S    ++   L+  FHQS   V+E
Sbjct: 2001 FCGRIVGLVIIHQHLLDAFFTRTFYKALLRSLCDLSDVEALDALFHQSMTWVIE 2054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,412,157
Number of Sequences: 59808
Number of extensions: 499369
Number of successful extensions: 1474
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)