Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N19
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 621 HFHQSPDAVLEGVRAGVKPPLSSEAPSAYLTPSSL 517
           H ++    +L+G  AGV+P  +S  P A +   SL
Sbjct: 5   HEYRLTKYLLDGYDAGVRPAENSSQPLAVVFGLSL 39


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 702 TLPCDFGYINPIIKSXIPYTNHPRLNIHFHQSP 604
           T P ++   NP +    P   +P  + H  Q P
Sbjct: 421 TSPMEYRLYNPALIQSQPSPQYPSTSSHILQQP 453


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 681 YINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVR 580
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 528 PSSLGMXKGVSPPYFQVNDESQASRLIS 445
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 681 YINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVR 580
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 528 PSSLGMXKGVSPPYFQVNDESQASRLIS 445
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 681 YINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVR 580
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,168
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)