Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N18
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot...    33   1.2  
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio...    33   1.2  
BC110648-1|AAI10649.1|  661|Homo sapiens CHD3 protein protein.         33   1.2  
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ...    33   1.2  
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.                 33   1.2  
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio...    33   1.2  

>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
          Length = 2000

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -1

Query: 711  IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 550
            + P   A S  S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL  E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574


>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
           regulator 1 protein.
          Length = 1077

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -1

Query: 702 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-----LKPPLSSEAPSA 538
           P+PA+S TST SS P   T TT   TS++    TP  ++  P        P +S   P+ 
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 324

Query: 537 YLTP 526
             TP
Sbjct: 325 TATP 328


>BC110648-1|AAI10649.1|  661|Homo sapiens CHD3 protein protein.
          Length = 661

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -1

Query: 711 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 550
           + P   A S  S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL  E
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 235


>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
           factor CA150 protein.
          Length = 1098

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -1

Query: 702 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-----LKPPLSSEAPSA 538
           P+PA+S TST SS P   T TT   TS++    TP  ++  P        P +S   P+ 
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAR 324

Query: 537 YLTP 526
             TP
Sbjct: 325 TATP 328


>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
          Length = 1944

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -1

Query: 711  IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 550
            + P   A S  S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL  E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574


>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
           regulator 1 variant protein.
          Length = 1081

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -1

Query: 702 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-----LKPPLSSEAPSA 538
           P+PA+S TST SS P   T TT   TS++    TP  ++  P        P +S   P+ 
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 328

Query: 537 YLTP 526
             TP
Sbjct: 329 TATP 332


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,340,100
Number of Sequences: 237096
Number of extensions: 2043727
Number of successful extensions: 5284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5283
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)