BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_N16 (858 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 36 0.049 Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 34 0.11 Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.26 Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.26 AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 33 0.26 Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.34 Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.34 Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.34 AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 33 0.34 AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 33 0.34 AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 33 0.34 Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.45 Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.45 Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.45 Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.45 Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 32 0.60 Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 32 0.60 J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 32 0.60 Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 31 0.79 Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 0.79 U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 31 1.1 U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 1.8 M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 30 1.8 AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 1.8 Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 30 2.4 U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protei... 30 2.4 U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 30 2.4 Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 29 3.2 Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 29 3.2 U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 3.2 U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 29 3.2 AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 29 3.2 AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 3.2 U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 29 4.2 AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 29 4.2 AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 29 4.2 Z68009-4|CAA92006.1| 152|Caenorhabditis elegans Hypothetical pr... 29 5.6 AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 29 5.6 AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 29 5.6 Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 28 7.4 AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 7.4 Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.8 Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 9.8 V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 9.8 J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 9.8 AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen pro... 28 9.8 >AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein 108 protein. Length = 304 Score = 35.5 bits (78), Expect = 0.049 Identities = 23/58 (39%), Positives = 25/58 (43%) Frame = -1 Query: 693 GARGQGPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G G G A G+ G C P A PA G+PG P GA G P P RPP Sbjct: 86 GVNGGGSEA--SGAPGNCEACCLPGAAGPAGTPGKPGRP-GKAGAPGL--PGNPGRPP 138 >Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical protein F54B11.1 protein. Length = 339 Score = 34.3 bits (75), Expect = 0.11 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Frame = +2 Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFTXA-TGPWPLAPP 697 P P G PGRP R G + G L PC+P T + P PP Sbjct: 145 PPGPSGHPGKPGRPGRPGGHGMPGMPGLGASPCQPRTQSQCQQCPQGPP 193 >Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical protein T11F9.9 protein. Length = 299 Score = 33.1 bits (72), Expect = 0.26 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVNGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical protein F55C10.2 protein. Length = 299 Score = 33.1 bits (72), Expect = 0.26 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVNGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical protein Y41C4A.19 protein. Length = 289 Score = 33.1 bits (72), Expect = 0.26 Identities = 20/47 (42%), Positives = 21/47 (44%) Frame = -1 Query: 660 KGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 K G CS P A PA G+PG P GA G P P RPP Sbjct: 79 KRQAGDCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 122 Score = 27.9 bits (59), Expect = 9.8 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Frame = +2 Query: 563 PRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697 P G PGRP R + G PC+P T P P PP Sbjct: 96 PAGTPGKPGRPGRPGAAGLPGNPGRPPAQPCDPITPPPCRPCPQGPP 142 >Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical protein C29F4.1 protein. Length = 299 Score = 32.7 bits (71), Expect = 0.34 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVTGGAASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical protein T28C6.6 protein. Length = 299 Score = 32.7 bits (71), Expect = 0.34 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical protein T28C6.4 protein. Length = 299 Score = 32.7 bits (71), Expect = 0.34 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen structural gene, probablecuticle component, from embryo to adult (28.7 kD) (col-3) protein. Length = 299 Score = 32.7 bits (71), Expect = 0.34 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen structural gene, probablecuticle component, from embryo to adult (28.7 kD) (col-117) protein. Length = 299 Score = 32.7 bits (71), Expect = 0.34 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P RPP Sbjct: 77 ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical protein Y41C4A.16 protein. Length = 309 Score = 32.7 bits (71), Expect = 0.34 Identities = 19/46 (41%), Positives = 21/46 (45%) Frame = -1 Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G G CS P A P+ G+PG P GA G P P RPP Sbjct: 101 GGGGSCSGCCLPGPAGPSGAPGKPGRP-GRPGAGGL--PGNPGRPP 143 Score = 31.9 bits (69), Expect = 0.60 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Frame = +2 Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697 P P G PGRP R G + G PC P T P P PP Sbjct: 114 PAGPSGAPGKPGRPGRPGAGGLPGNPGRPPAQPCHPITPPPCRPCPQGPP 163 >Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical protein F52B11.4 protein. Length = 304 Score = 32.3 bits (70), Expect = 0.45 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G CS P A PA G+PG P GA G P P RPP Sbjct: 99 GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138 >Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical protein W05B2.6 protein. Length = 304 Score = 32.3 bits (70), Expect = 0.45 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G CS P A PA G+PG P GA G P P RPP Sbjct: 99 GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138 >Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical protein W05B2.5 protein. Length = 304 Score = 32.3 bits (70), Expect = 0.45 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G CS P A PA G+PG P GA G P P RPP Sbjct: 99 GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138 >Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical protein W05B2.1 protein. Length = 304 Score = 32.3 bits (70), Expect = 0.45 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G CS P A PA G+PG P GA G P P RPP Sbjct: 99 GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138 >Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical protein F15A2.1 protein. Length = 291 Score = 31.9 bits (69), Expect = 0.60 Identities = 13/35 (37%), Positives = 14/35 (40%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGK 628 G G+RG P P G PGRP GK Sbjct: 158 GEPGVRGPNGPPGPNGHPGQPGRPGPAGPAGPEGK 192 >Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical protein B0491.2 protein. Length = 324 Score = 31.9 bits (69), Expect = 0.60 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXE---HGXPGRPSRVAGGAVSGK 628 G +G RG+Q P P + HG PG P V SGK Sbjct: 240 GPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGK 277 >J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. Length = 324 Score = 31.9 bits (69), Expect = 0.60 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXE---HGXPGRPSRVAGGAVSGK 628 G +G RG+Q P P + HG PG P V SGK Sbjct: 240 GPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGK 277 >Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical protein F55C10.3 protein. Length = 266 Score = 31.5 bits (68), Expect = 0.79 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = -1 Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 AR G A V G S G C P A PA G+PG P GA G P P PP Sbjct: 44 ARQSGYDAGVNGGSASTGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGHPP 100 >Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein F02D10.1 protein. Length = 316 Score = 31.5 bits (68), Expect = 0.79 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Frame = +2 Query: 515 SSGGRQGIRGEQNPXAPRX-----EHGXPGRPSRVAGGAVSGKXXLEHWPCEPFT-XATG 676 ++GG G G NP P + G PG+P SGK PCEP T Sbjct: 106 AAGGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAA--PCEPSTPPPCQ 163 Query: 677 PWPLAPP 697 P P PP Sbjct: 164 PCPAGPP 170 Score = 29.5 bits (63), Expect = 3.2 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 12/70 (17%) Frame = -1 Query: 696 GGARGQGPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXP----------CSXRGAXGFC 547 GG G G A G G C+ P P R G+PG P S +GA C Sbjct: 98 GGGGGGGEAA---GGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAAPC 154 Query: 546 SPRM--PCRP 523 P PC+P Sbjct: 155 EPSTPPPCQP 164 >U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein 33 protein. Length = 304 Score = 31.1 bits (67), Expect = 1.1 Identities = 18/47 (38%), Positives = 20/47 (42%) Frame = -1 Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517 G G C P A PA G PG P GA G P P +PP+ Sbjct: 96 GGGGNCEACCLPGPAGPAGAPGNPGRP-GKPGAPGL--PGNPGKPPV 139 >U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34 protein. Length = 299 Score = 30.3 bits (65), Expect = 1.8 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Frame = +2 Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697 P P G PGRP + + G PCEP T P P PP Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPP 153 Score = 29.1 bits (62), Expect = 4.2 Identities = 17/43 (39%), Positives = 18/43 (41%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G C P PA G+PG P GA G P P RPP Sbjct: 94 GSCESCCLPGPPGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen protein. Length = 298 Score = 30.3 bits (65), Expect = 1.8 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Frame = +2 Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFTXAT-GPWPLAPP 697 P P G PGRP + + G PCEP T P P PP Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPP 153 Score = 29.1 bits (62), Expect = 4.2 Identities = 17/43 (39%), Positives = 18/43 (41%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G C P PA G+PG P GA G P P RPP Sbjct: 94 GSCESCCLPGPPGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen RAM-4 protein. Length = 299 Score = 30.3 bits (65), Expect = 1.8 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Frame = +2 Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697 P P G PGRP + + G PCEP T P P PP Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPP 153 Score = 29.1 bits (62), Expect = 4.2 Identities = 17/43 (39%), Positives = 18/43 (41%) Frame = -1 Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G C P PA G+PG P GA G P P RPP Sbjct: 94 GSCESCCLPGPPGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133 >Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical protein F21C3.2 protein. Length = 813 Score = 29.9 bits (64), Expect = 2.4 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -1 Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXPC 574 G G S P T PPAT +G+ PC Sbjct: 679 GGGGGADSISNPTTMPPATNNGQQNTPC 706 >U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protein 53 protein. Length = 160 Score = 29.9 bits (64), Expect = 2.4 Identities = 17/58 (29%), Positives = 21/58 (36%) Frame = -1 Query: 693 GARGQGPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G +G ++G G+ FP A PA G PG G G P PP Sbjct: 31 GQQGDSAPPSIRGEPGERGDKGFPGVAGPAGEPGEPGHIYVSDGPPGKDGETGPRGPP 88 >U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein 113 protein. Length = 348 Score = 29.9 bits (64), Expect = 2.4 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGR 592 GR G RG++ P P+ + G PG+ Sbjct: 212 GRDGTRGQKGPIGPKGDSGPPGQ 234 Score = 27.9 bits (59), Expect = 9.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRV 604 G++G GE P P + G PG P ++ Sbjct: 245 GQRGNDGESGPVGPSGQLGMPGEPGQI 271 >Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical protein D2023.7 protein. Length = 336 Score = 29.5 bits (63), Expect = 3.2 Identities = 18/58 (31%), Positives = 21/58 (36%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFTXATGPWPLAPP 697 G GI G Q P P E G PG +V A + P E + A P P Sbjct: 254 GPDGINGFQGPGGPPGEEGKPGEDGKVGDDAAYCPCPDRNAPKENYASAPSHNPSNAP 311 >Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical protein F54C9.4 protein. Length = 287 Score = 29.5 bits (63), Expect = 3.2 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGK 628 G G+ GEQ P P+ G PGR + + GK Sbjct: 233 GDSGVDGEQGPQGPQGPDGQPGRDADNGQPGLPGK 267 >U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein 43 protein. Length = 303 Score = 29.5 bits (63), Expect = 3.2 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Frame = +2 Query: 542 GEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFT-XATGPWPLAPP 697 G P + G PGRP V GK PCEP T P P PP Sbjct: 107 GPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTA--PCEPTTPPPCKPCPQGPP 157 >U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein 172, isoform a protein. Length = 341 Score = 29.5 bits (63), Expect = 3.2 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEP 658 G+ G +GEQ P+ G PGRP G+ + P P Sbjct: 224 GQDGKKGEQGMPGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGP 268 >AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen protein 112 protein. Length = 297 Score = 29.5 bits (63), Expect = 3.2 Identities = 18/53 (33%), Positives = 20/53 (37%) Frame = -1 Query: 678 GPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520 G + G CS P A P G+PG P G G P P RPP Sbjct: 82 GAAGSAGAAGGSCSGCCLPGPAGPVGTPGKPGRP-GKPGVAGL--PGNPGRPP 131 >AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen protein. Length = 303 Score = 29.5 bits (63), Expect = 3.2 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Frame = +2 Query: 542 GEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFT-XATGPWPLAPP 697 G P + G PGRP V GK PCEP T P P PP Sbjct: 107 GPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTA--PCEPTTPPPCKPCPQGPP 157 >U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein 139 protein. Length = 310 Score = 29.1 bits (62), Expect = 4.2 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Frame = -1 Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXP--CSXRGAXGFCSPRMPCRP 523 GS C P T PA R G+PG P C G G +PC P Sbjct: 104 GSCQGCCLPGPPGTPGPAGRPGKPGRPGACGNHGNPG-KPTGLPCDP 149 >AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein 104 protein. Length = 281 Score = 29.1 bits (62), Expect = 4.2 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +2 Query: 518 SGGRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSG 625 S G +G G Q P P + G PG+P V G Sbjct: 200 SHGTKGAPGPQGPSGPVGQPGFPGQPGNDGNSGVPG 235 >AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2 protein. Length = 298 Score = 29.1 bits (62), Expect = 4.2 Identities = 12/24 (50%), Positives = 12/24 (50%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRP 595 GR G GEQ P P G PG P Sbjct: 260 GRPGPVGEQGPQGPEGPQGPPGEP 283 >Z68009-4|CAA92006.1| 152|Caenorhabditis elegans Hypothetical protein R09A8.4 protein. Length = 152 Score = 28.7 bits (61), Expect = 5.6 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEP 658 GR+G+RGE+ P P PG P V SG P EP Sbjct: 67 GREGVRGEKGPSGP------PGLPGLVGPKGFSGNSGPPGSPGEP 105 >AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen protein 99 protein. Length = 627 Score = 28.7 bits (61), Expect = 5.6 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSG 625 G QG+ G R + G PG P + G +SG Sbjct: 440 GPQGLPGHSGERGDRGDIGPPGLPGQPGAGEISG 473 >AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein 45 protein. Length = 327 Score = 28.7 bits (61), Expect = 5.6 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +2 Query: 518 SGGRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWP 649 +GG +G G+Q P + G PG P G+ K +H P Sbjct: 278 AGGEKGAPGDQGNPGPYGKPGQPGAPG--PDGSAGEKGGCDHCP 319 >Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical protein C09G5.3 protein. Length = 283 Score = 28.3 bits (60), Expect = 7.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGK 628 G+ G G + P P G PG+P R A G K Sbjct: 175 GKSGAPGGKGPQGPPGTPGRPGQPGRKAIGEAGPK 209 >AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein 141 protein. Length = 314 Score = 28.3 bits (60), Expect = 7.4 Identities = 15/55 (27%), Positives = 21/55 (38%) Frame = +2 Query: 530 QGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFTXATGPWPLAP 694 +G+ G P+ G PG+P + G G+ P P T P AP Sbjct: 208 RGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQPGAPGAPGHPGQAGTPGTPGAP 262 >Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein F23H12.4 protein. Length = 301 Score = 27.9 bits (59), Expect = 9.8 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -1 Query: 645 QCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517 QC P PA G+PG P GA G +P P +PP+ Sbjct: 97 QCEGCCLPGPPGPAGAPGKPGKP-GRPGAPG--TPGTPGKPPV 136 >Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical protein C09G5.4 protein. Length = 323 Score = 27.9 bits (59), Expect = 9.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSR 601 G+ G +G+Q P P G PG+P + Sbjct: 224 GQSGGQGQQGPAGPAGPDGQPGQPGQ 249 >V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caenorhabditis elegansgene Col-1 coding for a collagen. ). Length = 296 Score = 27.9 bits (59), Expect = 9.8 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -1 Query: 645 QCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517 QC P PA G+PG P GA G +P P +PP+ Sbjct: 92 QCEGCCLPGPPGPAGAPGKPGKP-GRPGAPG--TPGTPGKPPV 131 >J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans (nematode)collagen 1 (col-1) gene, complete cds. ). Length = 296 Score = 27.9 bits (59), Expect = 9.8 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -1 Query: 645 QCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517 QC P PA G+PG P GA G +P P +PP+ Sbjct: 92 QCEGCCLPGPPGPAGAPGKPGKP-GRPGAPG--TPGTPGKPPV 131 >AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen protein 46 protein. Length = 302 Score = 27.9 bits (59), Expect = 9.8 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -1 Query: 600 RDGRPGXPCSXRGAXGFCSPRMPCRPPLDH 511 RDG PG S GA G + R+PC PP+++ Sbjct: 112 RDGLPGTKGS-EGAPGLPA-RLPCEPPVNY 139 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,246,267 Number of Sequences: 27780 Number of extensions: 176669 Number of successful extensions: 1304 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 628 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1267 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2139963672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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