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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N16
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    36   0.049
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical...    33   0.26 
Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical pr...    33   0.34 
Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical pr...    33   0.34 
Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical pr...    33   0.34 
AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen stru...    33   0.34 
AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen stru...    33   0.34 
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    33   0.34 
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z70207-1|CAA94128.1|  291|Caenorhabditis elegans Hypothetical pr...    32   0.60 
Z49907-2|CAA90084.1|  324|Caenorhabditis elegans Hypothetical pr...    32   0.60 
J03146-1|AAA65468.1|  324|Caenorhabditis elegans collagen protein.     32   0.60 
Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    31   1.1  
U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    30   1.8  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    30   1.8  
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    30   1.8  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    30   2.4  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    30   2.4  
Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z49967-4|CAA90250.1|  287|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    29   3.2  
U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protei...    29   3.2  
AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen pro...    29   3.2  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    29   3.2  
U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    29   4.2  
AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    29   4.2  
AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    29   4.2  
Z68009-4|CAA92006.1|  152|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    29   5.6  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    29   5.6  
Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    28   7.4  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    28   9.8  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    28   9.8  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    28   9.8  
AC024751-11|ABF71718.1|  302|Caenorhabditis elegans Collagen pro...    28   9.8  

>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 23/58 (39%), Positives = 25/58 (43%)
 Frame = -1

Query: 693 GARGQGPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G  G G  A   G+ G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 86  GVNGGGSEA--SGAPGNCEACCLPGAAGPAGTPGKPGRP-GKAGAPGL--PGNPGRPP 138


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFTXA-TGPWPLAPP 697
           P  P    G PGRP R  G  + G   L   PC+P T +     P  PP
Sbjct: 145 PPGPSGHPGKPGRPGRPGGHGMPGMPGLGASPCQPRTQSQCQQCPQGPP 193


>Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical
           protein T11F9.9 protein.
          Length = 299

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVNGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical
           protein F55C10.2 protein.
          Length = 299

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVNGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41C4A.19 protein.
          Length = 289

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = -1

Query: 660 KGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           K   G CS    P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 79  KRQAGDCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 122



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = +2

Query: 563 PRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697
           P    G PGRP R     + G        PC+P T     P P  PP
Sbjct: 96  PAGTPGKPGRPGRPGAAGLPGNPGRPPAQPCDPITPPPCRPCPQGPP 142


>Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical
           protein C29F4.1 protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVTGGAASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.6 protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.4 protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-3) protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-117) protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 77  ARQAGYDAGVTGGSASAGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = -1

Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G  G CS    P  A P+   G+PG P    GA G   P  P RPP
Sbjct: 101 GGGGSCSGCCLPGPAGPSGAPGKPGRP-GRPGAGGL--PGNPGRPP 143



 Score = 31.9 bits (69), Expect = 0.60
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +2

Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697
           P  P    G PGRP R   G + G        PC P T     P P  PP
Sbjct: 114 PAGPSGAPGKPGRPGRPGAGGLPGNPGRPPAQPCHPITPPPCRPCPQGPP 163


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G CS    P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 99  GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138


>Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.6 protein.
          Length = 304

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G CS    P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 99  GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138


>Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.5 protein.
          Length = 304

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G CS    P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 99  GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138


>Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.1 protein.
          Length = 304

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G CS    P  A PA   G+PG P    GA G   P  P RPP
Sbjct: 99  GSCSGCCLPGAAGPAGTPGKPGRP-GRPGAAGL--PGNPGRPP 138


>Z70207-1|CAA94128.1|  291|Caenorhabditis elegans Hypothetical
           protein F15A2.1 protein.
          Length = 291

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGK 628
           G  G+RG   P  P    G PGRP         GK
Sbjct: 158 GEPGVRGPNGPPGPNGHPGQPGRPGPAGPAGPEGK 192


>Z49907-2|CAA90084.1|  324|Caenorhabditis elegans Hypothetical
           protein B0491.2 protein.
          Length = 324

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXE---HGXPGRPSRVAGGAVSGK 628
           G +G RG+Q P  P  +   HG PG P  V     SGK
Sbjct: 240 GPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGK 277


>J03146-1|AAA65468.1|  324|Caenorhabditis elegans collagen protein.
          Length = 324

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXE---HGXPGRPSRVAGGAVSGK 628
           G +G RG+Q P  P  +   HG PG P  V     SGK
Sbjct: 240 GPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGK 277


>Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical
           protein F55C10.3 protein.
          Length = 266

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -1

Query: 690 ARGQGPVAXVKG---SXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           AR  G  A V G   S G C     P  A PA   G+PG P    GA G   P  P  PP
Sbjct: 44  ARQSGYDAGVNGGSASTGGCDACCLPGAAGPAGTPGKPGRP-GKPGAPGL--PGNPGHPP 100


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
 Frame = +2

Query: 515 SSGGRQGIRGEQNPXAPRX-----EHGXPGRPSRVAGGAVSGKXXLEHWPCEPFT-XATG 676
           ++GG  G  G  NP  P       + G PG+P        SGK      PCEP T     
Sbjct: 106 AAGGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAA--PCEPSTPPPCQ 163

Query: 677 PWPLAPP 697
           P P  PP
Sbjct: 164 PCPAGPP 170



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
 Frame = -1

Query: 696 GGARGQGPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXP----------CSXRGAXGFC 547
           GG  G G  A   G  G C+    P    P  R G+PG P           S +GA   C
Sbjct: 98  GGGGGGGEAA---GGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAAPC 154

Query: 546 SPRM--PCRP 523
            P    PC+P
Sbjct: 155 EPSTPPPCQP 164


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -1

Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517
           G  G C     P  A PA   G PG P    GA G   P  P +PP+
Sbjct: 96  GGGGNCEACCLPGPAGPAGAPGNPGRP-GKPGAPGL--PGNPGKPPV 139


>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein
           34 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +2

Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697
           P  P    G PGRP +     + G        PCEP T     P P  PP
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPP 153



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G C     P    PA   G+PG P    GA G   P  P RPP
Sbjct: 94  GSCESCCLPGPPGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +2

Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFTXAT-GPWPLAPP 697
           P  P    G PGRP +     + G        PCEP T     P P  PP
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPP 153



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G C     P    PA   G+PG P    GA G   P  P RPP
Sbjct: 94  GSCESCCLPGPPGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular
           collagen RAM-4 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +2

Query: 554 PXAPRXEHGXPGRPSRVAGGAVSGKXXL-EHWPCEPFT-XATGPWPLAPP 697
           P  P    G PGRP +     + G        PCEP T     P P  PP
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPP 153



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -1

Query: 648 GQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G C     P    PA   G+PG P    GA G   P  P RPP
Sbjct: 94  GSCESCCLPGPPGPAGTPGKPGRP-GKPGAPGL--PGNPGRPP 133


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXPC 574
           G  G     S P T PPAT +G+   PC
Sbjct: 679 GGGGGADSISNPTTMPPATNNGQQNTPC 706


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = -1

Query: 693 GARGQGPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G +G      ++G  G+     FP  A PA   G PG      G  G      P  PP
Sbjct: 31  GQQGDSAPPSIRGEPGERGDKGFPGVAGPAGEPGEPGHIYVSDGPPGKDGETGPRGPP 88


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGR 592
           GR G RG++ P  P+ + G PG+
Sbjct: 212 GRDGTRGQKGPIGPKGDSGPPGQ 234



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRV 604
           G++G  GE  P  P  + G PG P ++
Sbjct: 245 GQRGNDGESGPVGPSGQLGMPGEPGQI 271


>Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical
           protein D2023.7 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFTXATGPWPLAPP 697
           G  GI G Q P  P  E G PG   +V   A        + P E +  A    P   P
Sbjct: 254 GPDGINGFQGPGGPPGEEGKPGEDGKVGDDAAYCPCPDRNAPKENYASAPSHNPSNAP 311


>Z49967-4|CAA90250.1|  287|Caenorhabditis elegans Hypothetical
           protein F54C9.4 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGK 628
           G  G+ GEQ P  P+   G PGR +      + GK
Sbjct: 233 GDSGVDGEQGPQGPQGPDGQPGRDADNGQPGLPGK 267


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 542 GEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFT-XATGPWPLAPP 697
           G   P     + G PGRP       V GK      PCEP T     P P  PP
Sbjct: 107 GPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTA--PCEPTTPPPCKPCPQGPP 157


>U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protein
           172, isoform a protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEP 658
           G+ G +GEQ    P+   G PGRP         G+  +   P  P
Sbjct: 224 GQDGKKGEQGMPGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGP 268


>AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen
           protein 112 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = -1

Query: 678 GPVAXVKGSXGQCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPP 520
           G       + G CS    P  A P    G+PG P    G  G   P  P RPP
Sbjct: 82  GAAGSAGAAGGSCSGCCLPGPAGPVGTPGKPGRP-GKPGVAGL--PGNPGRPP 131


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 542 GEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFT-XATGPWPLAPP 697
           G   P     + G PGRP       V GK      PCEP T     P P  PP
Sbjct: 107 GPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTA--PCEPTTPPPCKPCPQGPP 157


>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 657 GSXGQCSKXSFPETAPPATRDGRPGXP--CSXRGAXGFCSPRMPCRP 523
           GS   C     P T  PA R G+PG P  C   G  G     +PC P
Sbjct: 104 GSCQGCCLPGPPGTPGPAGRPGKPGRPGACGNHGNPG-KPTGLPCDP 149


>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 518 SGGRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSG 625
           S G +G  G Q P  P  + G PG+P       V G
Sbjct: 200 SHGTKGAPGPQGPSGPVGQPGFPGQPGNDGNSGVPG 235


>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRP 595
           GR G  GEQ P  P    G PG P
Sbjct: 260 GRPGPVGEQGPQGPEGPQGPPGEP 283


>Z68009-4|CAA92006.1|  152|Caenorhabditis elegans Hypothetical
           protein R09A8.4 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEP 658
           GR+G+RGE+ P  P      PG P  V     SG       P EP
Sbjct: 67  GREGVRGEKGPSGP------PGLPGLVGPKGFSGNSGPPGSPGEP 105


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSG 625
           G QG+ G       R + G PG P +   G +SG
Sbjct: 440 GPQGLPGHSGERGDRGDIGPPGLPGQPGAGEISG 473


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 518 SGGRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWP 649
           +GG +G  G+Q    P  + G PG P     G+   K   +H P
Sbjct: 278 AGGEKGAPGDQGNPGPYGKPGQPGAPG--PDGSAGEKGGCDHCP 319


>Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical
           protein C09G5.3 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGK 628
           G+ G  G + P  P    G PG+P R A G    K
Sbjct: 175 GKSGAPGGKGPQGPPGTPGRPGQPGRKAIGEAGPK 209


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +2

Query: 530 QGIRGEQNPXAPRXEHGXPGRPSRVAGGAVSGKXXLEHWPCEPFTXATGPWPLAP 694
           +G+ G      P+   G PG+P +  G    G+      P  P    T   P AP
Sbjct: 208 RGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQPGAPGAPGHPGQAGTPGTPGAP 262


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 645 QCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517
           QC     P    PA   G+PG P    GA G  +P  P +PP+
Sbjct: 97  QCEGCCLPGPPGPAGAPGKPGKP-GRPGAPG--TPGTPGKPPV 136


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 524 GRQGIRGEQNPXAPRXEHGXPGRPSR 601
           G+ G +G+Q P  P    G PG+P +
Sbjct: 224 GQSGGQGQQGPAGPAGPDGQPGQPGQ 249


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 645 QCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517
           QC     P    PA   G+PG P    GA G  +P  P +PP+
Sbjct: 92  QCEGCCLPGPPGPAGAPGKPGKP-GRPGAPG--TPGTPGKPPV 131


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 645 QCSKXSFPETAPPATRDGRPGXPCSXRGAXGFCSPRMPCRPPL 517
           QC     P    PA   G+PG P    GA G  +P  P +PP+
Sbjct: 92  QCEGCCLPGPPGPAGAPGKPGKP-GRPGAPG--TPGTPGKPPV 131


>AC024751-11|ABF71718.1|  302|Caenorhabditis elegans Collagen
           protein 46 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 600 RDGRPGXPCSXRGAXGFCSPRMPCRPPLDH 511
           RDG PG   S  GA G  + R+PC PP+++
Sbjct: 112 RDGLPGTKGS-EGAPGLPA-RLPCEPPVNY 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,267
Number of Sequences: 27780
Number of extensions: 176669
Number of successful extensions: 1304
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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