Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N15
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207...    29   5.0  

>04_04_0843 -
           28619064-28619280,28619730-28619825,28620349-28620720,
           28620849-28621161,28621183-28621393,28621478-28621681,
           28622328-28622726
          Length = 603

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 644 KHCPXRSLPTFAHXXLXSXPPPXGDKIPVXXPTXLXXXTYRYIPFG 781
           +HCP R         +   PPP G ++PV  P  L    +  +P+G
Sbjct: 102 RHCPARG-----EAPVCLVPPPRGYRVPVPWPESLHKIWHDNMPYG 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,173
Number of Sequences: 37544
Number of extensions: 275120
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)