Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_N12
(789 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 315 7e-85
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 301 1e-80
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 276 5e-73
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 235 1e-60
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 195 9e-49
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 190 3e-47
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 176 6e-43
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 128 2e-28
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 4e-24
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 99 1e-19
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 95 1e-18
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 93 7e-18
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 89 1e-16
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 89 1e-16
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 87 4e-16
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 87 5e-16
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 87 6e-16
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 84 3e-15
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 84 3e-15
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 77 5e-13
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 76 1e-12
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 72 1e-11
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 72 1e-11
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 64 3e-09
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.5
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A2ESM4 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32; Bacteri... 35 2.7
UniRef50_Q1NYY1 Cluster: 50S ribosomal protein L3; n=4; Bacteria... 31 3.3
UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;... 34 3.5
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 33 6.2
UniRef50_A0C8G5 Cluster: Chromosome undetermined scaffold_158, w... 33 6.2
UniRef50_Q9HKB5 Cluster: Putative uncharacterized protein Ta0686... 33 6.2
UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal pr... 33 6.2
UniRef50_O83219 Cluster: 50S ribosomal protein L3; n=2; Treponem... 33 6.2
UniRef50_A7HD55 Cluster: DNA polymerase III delta; n=2; Anaeromy... 33 8.2
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 8.2
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 315 bits (774), Expect = 7e-85
Identities = 142/177 (80%), Positives = 160/177 (90%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KGKGYKGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV+F+ ARAGQKGYHHRTE+NKK
Sbjct: 224 KGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKK 283
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
IY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G KKR
Sbjct: 284 IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 343
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 344 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 39.5 bits (88), Expect = 0.094
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -3
Query: 748 IQLNGVPSRTK*NGPENIWRXXIPVDSVFAQDEMIDCIGVTQGQ 617
IQ+NG K + +PV+ VF QDEMID IGVT+G+
Sbjct: 183 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 301 bits (739), Expect = 1e-80
Identities = 143/226 (63%), Positives = 167/226 (73%)
Frame = -1
Query: 774 RQKKAHIMXSNLTVYHRGQSEMGQRTSGEXXSLSILCLPKMK*LTALVSPKGKGYKGVTS 595
RQKKAHIM L + + E + + + + KG+G KGVTS
Sbjct: 174 RQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
Query: 594 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKKIYRIGQGIHK 415
RWHTKKLPRKTHKGLRKVACIGAWHP+RV + ARAGQKGYHHRTE+NKKI+RIG+G H
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHM 293
Query: 414 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 235
+DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G KKR+ITLRKSL V
Sbjct: 294 EDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLV 353
Query: 234 HTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
H R A+E I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 354 HHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 276 bits (676), Expect = 5e-73
Identities = 126/176 (71%), Positives = 148/176 (84%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
+G G+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FT ARAGQKG+HHRT +N K
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNK 235
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
IYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 236 IYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 292
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 293 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 235 bits (574), Expect = 1e-60
Identities = 108/177 (61%), Positives = 130/177 (73%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KG G+ GV RW LPRKTH+GLRKVACIGAWHPSRV +T ARAGQ GYHHRT +NKK
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKK 337
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
IY++G+ + + N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R
Sbjct: 338 IYQLGRAVSMEP-----NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRR 392
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 393 VITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 195 bits (476), Expect = 9e-49
Identities = 104/221 (47%), Positives = 144/221 (65%)
Frame = -1
Query: 771 QKKAHIMXSNLTVYHRGQSEMGQRTSGEXXSLSILCLPKMK*LTALVSPKGKGYKGVTSR 592
QKKAH+ S + + + + + ++ + +++ L + + KGK YKG++S
Sbjct: 132 QKKAHLTESQVNRGPVAKLDWAHKKLEQQVPVNHIF--RVRRLFVIGTTKGKHYKGISSH 189
Query: 591 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
W+TKK+P KTH+ + ACI W + A A QKG HH T +NKKIY+IGQG K
Sbjct: 190 WYTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIK 242
Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
+GK+IKNNAST+Y KSI+P+GG H G+V NDFVM+K C +G KKR+++L KSL +
Sbjct: 243 NGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTKKRVLSLCKSLLMR 299
Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 300 TKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 190 bits (464), Expect = 3e-47
Identities = 97/177 (54%), Positives = 122/177 (68%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KG GYKGVT + P + +G K+ C+GAWHP+RV+F+ A+ GQKGYHH + NKK
Sbjct: 204 KGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKK 261
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
I +IGQG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + KK
Sbjct: 262 ICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTKKH 321
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
+T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 322 -LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 176 bits (428), Expect = 6e-43
Identities = 89/173 (51%), Positives = 116/173 (67%)
Frame = -1
Query: 645 LTALVSPKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHH 466
+ A+ KG G KGV SRW +LPRKTH+GLRKVACIG W PSRV++T +RAGQKGYH
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHK 258
Query: 465 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGC 286
RT NKKIY+IG +++ N+ S D KS+ MGGF +G +NND+++IKG
Sbjct: 259 RTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGS 312
Query: 285 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 127
G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 313 MTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 128 bits (309), Expect = 2e-28
Identities = 67/157 (42%), Positives = 93/157 (59%)
Frame = -1
Query: 645 LTALVSPKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHH 466
L + KGKG +G RW K K KG RKV IG WHP+RV +T AGQ G+HH
Sbjct: 219 LDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHH 278
Query: 465 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGC 286
RTE+NK++ IG+ +GK +K + +TE + ITP GGFPHYG V +DF+MI G
Sbjct: 279 RTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFPHYGIVRSDFMMIAGS 327
Query: 285 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 175
G KRII +R ++R K+ +++ + ++ SK
Sbjct: 328 VPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 4e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -1
Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 229
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 228 KRAALEK 208
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 98.7 bits (235), Expect = 1e-19
Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKG++G RW K + + KG+ R V IG W P V ++ GQ GYH RTE N
Sbjct: 203 KGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYN 262
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K+I +IG NN ITP GGF HYG + N++V++KG GP
Sbjct: 263 KRILKIG------------NNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQGPA 302
Query: 270 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 169
KR+I LR+++R + ++ + +I T+SK G
Sbjct: 303 KRLIVLRRAIR--PQEPLIKVPEITYISTTSKQG 334
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 95.5 bits (227), Expect = 1e-18
Identities = 56/152 (36%), Positives = 80/152 (52%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KGKG++GV R+ K L K K R++ +G + V T +AGQ GYH RTE+NK+
Sbjct: 228 KGKGWQGVIKRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKR 287
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
I RI E +TP GGF HYGEV N +++++G GP KR
Sbjct: 288 ILRISNP-------------------GESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKR 328
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFG 169
++ R +R HT + ++L ++ TSSK G
Sbjct: 329 LLRFRDPVRPHTN---VFDVDLTYVSTSSKQG 357
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 93.1 bits (221), Expect = 7e-18
Identities = 55/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKG++GV RW RKT + R + IG PSRV +T AGQ GYH RTE N
Sbjct: 209 KGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHN 268
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K+I +IG+ DG + +TP GGF +YG V D++MI G GPK
Sbjct: 269 KRILKIGE-----DG---------------EEVTPRGGFVNYGVVRGDYIMIHGTVPGPK 308
Query: 270 KRIITLRKSLR 238
KR+I +R ++R
Sbjct: 309 KRLIRVRPAVR 319
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 89.0 bits (211), Expect = 1e-16
Identities = 49/129 (37%), Positives = 71/129 (55%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KGKG++GV RW+ KK K+ K +R+V +G P V +T RAGQ G+H R E +K+
Sbjct: 204 KGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKR 263
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
I +G +T+ D + I P GGF H+G V DF+++KG G +R
Sbjct: 264 IMIMG---------------NTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRR 306
Query: 264 IITLRKSLR 238
+I LR +R
Sbjct: 307 LIKLRSQIR 315
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 89.0 bits (211), Expect = 1e-16
Identities = 55/152 (36%), Positives = 74/152 (48%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KGKG+ G R+ K LPRK K R + +G WHP V T +AGQ GY RT N +
Sbjct: 199 KGKGFTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVR 258
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
+ + +G +A T I GGF HYG V ND+V++ G GP KR
Sbjct: 259 VLKYSKG----------EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKR 300
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFG 169
+I +R R K ++ + L +I SK G
Sbjct: 301 LIKMRDPAR--QKVPDIDNVKLDYISLESKQG 330
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 87.4 bits (207), Expect = 4e-16
Identities = 52/150 (34%), Positives = 80/150 (53%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KGKG++GV R+H + K+ KG+RKV IG+ P R+ T GQ GYH RTE NK
Sbjct: 196 KGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKL 255
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
I +IG+ ++ + GG+ YG+V +++KG GP+KR
Sbjct: 256 IIKIGEPLNVE-----------------------GGWVRYGQVIGPTILLKGSVPGPRKR 292
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSK 175
+I LR+++R K+ +E +++I S K
Sbjct: 293 LIILREAIRPPRKQEKVE--GIEYISLSPK 320
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 87.0 bits (206), Expect = 5e-16
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KG G +G RW RK + +K V +G W+P R+ + + GQ GYH RTE N
Sbjct: 206 KGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYN 265
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K+I ++G D +E+ ITP GGF HYG + ND++M+KG GP
Sbjct: 266 KRILKMG-------------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPGPV 305
Query: 270 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 169
KR++ +R ++R K + + ++ T SK G
Sbjct: 306 KRMVRIRPAVR--PKNMPKQAPEITYLSTQSKMG 337
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 86.6 bits (205), Expect = 6e-16
Identities = 57/152 (37%), Positives = 77/152 (50%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KG G +GV R+ K L K K R++ +G + V T +AGQ GYH RTE NK+
Sbjct: 208 KGYGNQGVVRRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKR 267
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
I RI A E E ITP GGF HYGEV N +++I+G GP KR
Sbjct: 268 ILRI---------------AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKR 308
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFG 169
+I R + R R +++ ++ T+SK G
Sbjct: 309 LIRFRDAAR---PRREQPPVDITYVSTASKQG 337
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -1
Query: 282 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 103
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 102 REE 94
+E
Sbjct: 148 AKE 150
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 84.2 bits (199), Expect = 3e-15
Identities = 46/140 (32%), Positives = 72/140 (51%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
KGKG++GV R K+ K+ K +R++ +G P V +T RAGQ G+H R E NK+
Sbjct: 202 KGKGWQGVIQRMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKR 261
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
I +G G+ + +I P GG+ H+G V D++++KG G +R
Sbjct: 262 IMAVGSA-----GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRR 303
Query: 264 IITLRKSLRVHTKRAALEKI 205
++ LR +R KR + I
Sbjct: 304 LVKLRAQIRNAPKRTSKPNI 323
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 84.2 bits (199), Expect = 3e-15
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKG +G RW +K K +G R+ + +G W+PSRV T + GQ GYH RTE+N
Sbjct: 205 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 264
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K++ I G TP GGFP+YGEV+ + ++KG GP+
Sbjct: 265 KRLIDINDG---------------------DEPTPDGGFPNYGEVDGPYTLVKGSVPGPE 303
Query: 270 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 169
+R++ R ++R + + L+ ++++ T+S G
Sbjct: 304 QRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQG 335
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 77.0 bits (181), Expect = 5e-13
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKG++G R+ +++PR K KG ++ +G P+ + F GQ G+H RTE N
Sbjct: 201 KGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYN 259
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K+I ++G D + S K I P GG+PHYG V + F++++G G
Sbjct: 260 KRILKVG------DAE------------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAV 301
Query: 270 KRIITLRKSLR 238
KR++ LR ++R
Sbjct: 302 KRLVRLRHAIR 312
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 75.8 bits (178), Expect = 1e-12
Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSF-TAARAGQKGYHHRTEM 454
KGKG++GV RW K+LPR K KG R+ IGA R +F +AGQ G+H RTE
Sbjct: 210 KGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEY 266
Query: 453 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 274
NK+I I +K +TP GGF YG V + FVM+ G G
Sbjct: 267 NKRILMIDDDGYK--------------------VTPAGGFLRYGVVRSTFVMLSGSIPGT 306
Query: 273 KKRIITLRKSLRVHT--KRAALEKINLKFIDTSSKFG 169
KR I +R ++R + + K + +I +SK G
Sbjct: 307 PKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 72.1 bits (169), Expect = 1e-11
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTAA-RAGQKGYHHRTEM 454
KGKG++GV R+ K+LPR K KG RK IG+ P + + + GQ G+H RTE
Sbjct: 264 KGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEY 320
Query: 453 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 274
NK+I +IG ++ +TP GGF YG V ++M+ G +GP
Sbjct: 321 NKRIIKIG--------------------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIGP 360
Query: 273 KKRIITLRKSLR 238
+KR++ LR +R
Sbjct: 361 RKRLLVLRHPIR 372
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 72.1 bits (169), Expect = 1e-11
Identities = 50/131 (38%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKG+ GV R+ +LPR K KG RK+ G S+T + GQ G+H RTE N
Sbjct: 222 KGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYTP-QPGQLGFHRRTEYN 279
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K+I +IG K I P GGF YG V N +V+++G +G K
Sbjct: 280 KRIIKIGD--------------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSK 319
Query: 270 KRIITLRKSLR 238
KR I LR+ +R
Sbjct: 320 KRPIFLREPVR 330
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 64.5 bits (150), Expect = 3e-09
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKG++GV R+ K+LP+ K KG R+V +W S+ + GQ GYH RT+ N
Sbjct: 227 KGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTSSYVP-QPGQMGYHRRTDYN 284
Query: 450 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 271
K++ I K I GG+ HYG V + +V++KG GP
Sbjct: 285 KRVLMISDDPSK--------------------INVEGGWLHYGLVKSKYVVLKGSVFGPP 324
Query: 270 KRIITLRKSLR 238
KR I +R +R
Sbjct: 325 KRPIIMRLPVR 335
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 242 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 120
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 93
Score = 35.1 bits (77), Expect = 2.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 102
FFFFFF + N YF+ L L ++ GCG FA
Sbjct: 19 FFFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 35.1 bits (77), Expect = 2.0
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 253 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLS 432
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 433 NTIDFLVHFSTVMITFLTST 492
D V+F+ + I + S+
Sbjct: 509 --CDNYVYFTPINILSIYSS 526
>UniRef50_A2ESM4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 482
Score = 34.7 bits (76), Expect = 2.7
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 292 LDHHKVVVYFTIMGETSHRCNG-FLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTV 468
LD + V ++F + E S + N F + + I++N+F +++S +D+L+ +
Sbjct: 270 LDDYNVAIFFNWIIENSSKTNNLFSKSVPYIENILYNHFVCHSYEAVSYIVDWLISNNLY 329
Query: 469 MITFLTSTSCS 501
I F +SCS
Sbjct: 330 QIIFDILSSCS 340
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 34.7 bits (76), Expect = 2.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 608 LYPLPLGDTNAVNHFILGKHRIDRDXXSPDVLWPISLCPRWYTVKLDXIM*AFFCR 775
L + GD+N +NHFIL ++R++R+ P++ TV LD +F R
Sbjct: 48 LETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLR 103
>UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 685
Score = 34.7 bits (76), Expect = 2.7
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -1
Query: 441 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 262
YR G H DG + NNA++++ +K +P F GE + ++ G + K
Sbjct: 567 YRSSWGYHGDDGAIFLNNANSDFSYYKKE-SPSDDFGAKGEFGANDIVGVGLNLETGKGF 625
Query: 261 ITLRKSLR 238
+TL +LR
Sbjct: 626 VTLNGNLR 633
>UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32;
Bacteria|Rep: 50S ribosomal protein L3 - Clostridium
tetani
Length = 209
Score = 34.7 bits (76), Expect = 2.7
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRK-THKGLRKVACIG-AWHPSRVSFTAARAGQKGYHHRTEMN 451
KGKGY+G+ RW+ + P K R V +G A +P+R AG G T +N
Sbjct: 115 KGKGYQGIIKRWNAHRGPMSHGSKFHRAVGSMGAASYPARTFKNKRMAGHMGNVKSTVLN 174
Query: 450 KKIYR 436
++ +
Sbjct: 175 LEVVK 179
>UniRef50_Q1NYY1 Cluster: 50S ribosomal protein L3; n=4;
Bacteria|Rep: 50S ribosomal protein L3 - Candidatus
Sulcia muelleri str. Hc (Homalodisca coagulata)
Length = 206
Score = 31.5 bits (68), Expect(2) = 3.3
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTH---KGLRKVACIGAWH-PSRVSFTAARAGQKGYHHRTE 457
KGKG++GV R + ++H R IGA PSRV AG+ G T
Sbjct: 112 KGKGFQGVVKRHGFSGVGERSHGQHNRSRAPGSIGAGSDPSRVFKGTRMAGRMGNKKVTL 171
Query: 456 MNKKIYRI 433
N+KI +I
Sbjct: 172 KNRKILKI 179
Score = 21.8 bits (44), Expect(2) = 3.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 312 NDFVMIKGCCMGPKKRIITLRK 247
N+F++IKG G K + ++K
Sbjct: 183 NNFLIIKGSVPGAKNSYLIIKK 204
>UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;
n=31; Deuterostomia|Rep: Mitochondrial 39S ribosomal
protein L3 - Homo sapiens (Human)
Length = 348
Score = 34.3 bits (75), Expect = 3.5
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -1
Query: 621 GKGYKGVTSRWHTKKLPRKTH---KGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMN 451
GKG++GV RW K P TH K R+ + RV G+ G +RTE
Sbjct: 212 GKGFQGVMKRWGFKGQP-ATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYG 270
Query: 450 KKIYRI 433
K++RI
Sbjct: 271 LKVWRI 276
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.5 bits (73), Expect = 6.2
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -1
Query: 483 QKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDF 304
++ H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 140 EQNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGF 198
Query: 303 VMIKGCCMGPKKRIITLRKSLRVHTKRAAL 214
+ G G R I L+K+L + TK L
Sbjct: 199 PVKMGKYNGENYRYIVLQKALLIPTKTGRL 228
>UniRef50_A0C8G5 Cluster: Chromosome undetermined scaffold_158, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_158, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 2502
Score = 33.5 bits (73), Expect = 6.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -2
Query: 521 ILLGCRSLQLVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLKTMHLLSMIC 366
++LG + +V ++++T LK IV D+ + + K++K MH + IC
Sbjct: 2208 LVLGFTNYVIVYFLQLLLTSLKYYNWPIVFDQRYVETITKIIKAMHFIQKIC 2259
>UniRef50_Q9HKB5 Cluster: Putative uncharacterized protein Ta0686;
n=2; Thermoplasmatales|Rep: Putative uncharacterized
protein Ta0686 - Thermoplasma acidophilum
Length = 575
Score = 33.5 bits (73), Expect = 6.2
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = -1
Query: 510 VSFTAARAGQKGYHHRTEMNKKIY---RIGQGIHKKDGKVIKNNASTEYDLSEKSITPMG 340
+ + R GYH R EMN Y R+ + I+ DGK + A E SE G
Sbjct: 25 IGYLDLRPDGMGYHKRGEMNGLWYPPLRVLKNIYVSDGKTVFKPAHAEIGYSEARFEFYG 84
Query: 339 GFPHYG-EVNNDF-VMIKGCCMGPKKRIITLRKSLRVHTKRAALEKIN 202
+ +NDF + +K +K I+ L +T K+N
Sbjct: 85 TTLQISFQDDNDFEIAVKNASNDVRKLIVELHPETVWYTVNDTRIKVN 132
>UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal
protein L3; n=2; Caenorhabditis|Rep: Putative
mitochondrial 39S ribosomal protein L3 - Caenorhabditis
elegans
Length = 403
Score = 33.5 bits (73), Expect = 6.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 615 GYKGVTSRWHTKKLP-RKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKKIY 439
G++G RW + P R+T K R++ +G+ +R+ G GY RT +I
Sbjct: 234 GFQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGYEWRTVSGLEIV 293
Query: 438 RI 433
RI
Sbjct: 294 RI 295
>UniRef50_O83219 Cluster: 50S ribosomal protein L3; n=2;
Treponema|Rep: 50S ribosomal protein L3 - Treponema
pallidum
Length = 208
Score = 33.5 bits (73), Expect = 6.2
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Frame = -1
Query: 678 LSILCLPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKTH--KGLRKVACIG-AWHPSRV 508
L + L ++ L KGKG++GV RW R +H K R+ G P R
Sbjct: 94 LDVRVLESVRYLDVCALSKGKGFQGVVKRWGFSG-GRSSHGSKFHREAGSTGQCTSPGRT 152
Query: 507 SFTAARAGQKGYHHRTEMNKKIYRI--GQGIHKKDGKVIKNNASTEY 373
G+ G T N +I RI G G+ G V N +T +
Sbjct: 153 FKNVKMPGRMGAERVTVQNLRIERIDVGLGVVMVRGAVPGRNKATVF 199
>UniRef50_A7HD55 Cluster: DNA polymerase III delta; n=2;
Anaeromyxobacter|Rep: DNA polymerase III delta -
Anaeromyxobacter sp. Fw109-5
Length = 458
Score = 33.1 bits (72), Expect = 8.2
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 485 PARAAVNDTLEGCQAPMQATFLRPLCVLRGSFFVCQREVTPL 610
PARAA TLE C A ++A RP+ +L G F+ R L
Sbjct: 8 PARAAAGATLETCLADVRAGSPRPVYLLDGDAFLALRAAREL 49
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 8.2
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -1
Query: 321 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 196
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,957,281
Number of Sequences: 1657284
Number of extensions: 17059694
Number of successful extensions: 41478
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 40087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41430
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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