Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_N12
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 241 1e-64
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 241 1e-64
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 28 1.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 5.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.1
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 9.4
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 241 bits (589), Expect = 1e-64
Identities = 112/172 (65%), Positives = 133/172 (77%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
+GKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +T ARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKR 334
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 335 VLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 775 ATKEGSHYXIQLNGVPSRTK*NGPENIWRXXIPVDSVFAQDEMIDCIGVTQGQ 617
A K+ IQ+NG K + + + S F Q+EMID IGVT+G+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 241 bits (589), Expect = 1e-64
Identities = 112/172 (65%), Positives = 133/172 (77%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKK 445
+GKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +T ARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 444 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 265
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKR 334
Query: 264 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 335 VLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 775 ATKEGSHYXIQLNGVPSRTK*NGPENIWRXXIPVDSVFAQDEMIDCIGVTQGQ 617
A K+ IQ+NG K + + + S F Q+EMID IGVT+G+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 785 LLNSDKRRLTLXNPT*RCTIEDKVKWAREHLEKXYPCRFCVCPR 654
L++S++ +LT PT +IE K+ A + PC V P+
Sbjct: 2 LVSSNEEQLTAHTPTSSSSIEPKILAACSYSLSVGPCSLAVSPK 45
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 367 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 630 SPKGKGYKGVTSRWHTKKLPRKTHK 556
+PK K + G T WH+ PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 352 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 480
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Frame = -1
Query: 624 KGKGYKGVTSRWHTK--KLPRKTHKGLRKVACIGA-WHPSRVSFTAARAGQKGYHHRTEM 454
KGKG+ GV RW R G PSRV AG G+ RT
Sbjct: 158 KGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRKMAGHMGHRSRTVK 217
Query: 453 NKKIYRI 433
N ++ +
Sbjct: 218 NLLVWAV 224
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 412 LFVDSLSNTIDFLVHFSTVMITFLTSTSCSERHPRRMPSSNA 537
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,293
Number of Sequences: 5004
Number of extensions: 71796
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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