Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N12
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               188   4e-48
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         140   2e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   3.2  
SB_47559| Best HMM Match : Antimicrobial_9 (HMM E-Value=3.6)           29   5.7  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        29   5.7  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   7.5  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  188 bits (458), Expect = 4e-48
 Identities = 93/150 (62%), Positives = 109/150 (72%), Gaps = 3/150 (2%)
 Frame = -1

Query: 783 VKQRQKKAHIMXSNLTVYHRGQSEMG---QRTSGEXXSLSILCLPKMK*LTALVSPKGKG 613
           +K RQKKAHIM   +        ++    +R         +    +M  +  +   KG G
Sbjct: 170 LKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEM--IDVIGVTKGHG 227

Query: 612 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTAARAGQKGYHHRTEMNKKIYRI 433
           +KGVT RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+ ARAGQ GYHHRTE+NKKIYRI
Sbjct: 228 FKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRI 287

Query: 432 GQGIHKKDGKVIKNNASTEYDLSEKSITPM 343
           GQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 288 GQGIHKKDGKVIKNNASTEYDLTDKSISPM 317



 Score = 32.3 bits (70), Expect = 0.46
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -3

Query: 679 PVDSVFAQDEMIDCIGVTQG 620
           PV  VF+ DEMID IGVT+G
Sbjct: 206 PVRKVFSPDEMIDVIGVTKG 225


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  140 bits (338), Expect = 2e-33
 Identities = 62/82 (75%), Positives = 70/82 (85%)
 Frame = -1

Query: 342 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 163
           GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 162 RFQTPADKAAFMGTLKKDRIRE 97
           RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -1

Query: 477 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 343
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 417 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 292
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 120
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_47559| Best HMM Match : Antimicrobial_9 (HMM E-Value=3.6)
          Length = 254

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -1

Query: 627 PKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWH-PSRVSFTAARAGQKGYHHRTEMN 451
           PK  G KG+ S  + K +  K     +K+    +W  P R       + QK    R+   
Sbjct: 33  PKKYGGKGLGS--NQKDMAEKVLGATKKIWRKRSWEQPKRYGEKGLGSNQKDMAKRSWEQ 90

Query: 450 KKIYRIGQGIHKKDGKVI 397
            K ++ G G ++KDGK +
Sbjct: 91  PKRWQKGLGSNQKDGKKV 108


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 325 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 486
           ++GE       FLR++ +S C++  N+   F   +    D L+ F++  + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -1

Query: 501  TAARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 322
            TA  +GQ    +  E  + I+ +   +   D      ++STE++ + +     G F  +G
Sbjct: 3457 TAVESGQNIAINFAEGLEPIHELN--LEYNDDVSFCGHSSTEFNSTLRGGIKSGKFKDFG 3514

Query: 321  EVNNDFVMIKGCC 283
            +V ND   +  CC
Sbjct: 3515 KVRNDVDCVNRCC 3527


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 764 RLTLXNPT*RCTIEDKVKWAREHLE 690
           RL + NP   C I DK KW  EHLE
Sbjct: 536 RLGIYNP---CVIGDKPKWYSEHLE 557


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 273 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 124
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 160 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 35
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,855,153
Number of Sequences: 59808
Number of extensions: 575279
Number of successful extensions: 1221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)