Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_N10
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 145 6e-36
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 29 0.58
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 28 1.3
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 4.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.1
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 7.2
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 145 bits (352), Expect = 6e-36
Identities = 68/114 (59%), Positives = 82/114 (71%)
Frame = -3
Query: 775 TFGSTGRGQVHDXHGLLSLHENFDQQFVPLRLQSSKQLLNVINKNFGTLAFCKRWLERAG 596
TFGSTGRG VH+ + D +PLRL +K LLN I +NFGTL FC+R+L+R G
Sbjct: 313 TFGSTGRGVVHEDMECSHYAKIPDAGHIPLRLPRAKALLNTITQNFGTLPFCRRYLDRIG 372
Query: 595 ASRYAMALKDLCDKGVVDAYPPLCDIKGCYTAQFEHTILLRPTCKEVVSRGDDY 434
S+Y +AL +L G+V YPPLCDI+G YTAQFEHTI+L PT KEVVSRGDDY
Sbjct: 373 ESKYLLALNNLVSAGIVQDYPPLCDIRGSYTAQFEHTIILHPTQKEVVSRGDDY 426
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 758 TWSSSRRXWTALTT*KLRSAICSVEIAIVETASERDQQELWYTRVL 621
TW RR W L + I + +T +E+D ++L +TRVL
Sbjct: 55 TWQVKRREWKMGIINTLTERLQQPAILLPKTVTEQDTKKLEWTRVL 100
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 363 TALTVVVKRLKDLQMFELF*YWKCSCNAFIT--CFGVV 256
T L +V +LKD ++ +L YW N FI C+ ++
Sbjct: 536 TELNAIVSQLKDERILKLQTYWSIGINLFILIGCYVII 573
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 461 LAGGSEQDGVFELCGVAPLDVAEGRV 538
L GSE+DG + G+ PL + +G++
Sbjct: 119 LPEGSEEDGHLKETGITPLSLQQGKI 144
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 613 WLERAGASRYAMALKDLCDK-GVVDAYPPLC-DIKGCYTAQFEHTILLRPTCKEVVS 449
WLE+ + LK+L + +A+ L DI GC TA T LL C EV+S
Sbjct: 1262 WLEQQNSK-----LKELAQRLNTFNAHVVLLQDIHGCLTAWARLTGLLVDDCNEVIS 1313
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 535 PPLCDIKGCYTAQFEHTILLRPTCKEVVSR 446
P LCD++ T+Q E+ + CK++ R
Sbjct: 320 PYLCDVQAFLTSQLEYYFSIENLCKDMFLR 349
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 529 LCDIKGCYTAQFEHTILLRPTCKEVVSR 446
L +IKG +FE L + TC +VV R
Sbjct: 348 LVEIKGAVFKKFEKENLFQLTCSDVVER 375
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 87 PYQLTYTKIFWGNN*KSSPXRWLIAYLAYEHYSL 188
PY + YT +F+G++ +SP L+ + + Y L
Sbjct: 377 PYFIIYTLVFFGSSIANSPSVSLLTKVLHPKYHL 410
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 558 TRGWWTPTRPSATSRGATPHSSNTPSCSDPPARKSCPVAMTT 433
T G RPSA + GA P +++ P + + P+A T
Sbjct: 325 TNGRPVAPRPSAGAGGANPPAASQPGLLGGSSNSAGPIAAAT 366
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +3
Query: 3 FFFFFQNYDGAII*KTLKRSDFVFFCSSPYQLTYTKIFWGNN 128
F FF NY K KRSD V C++ + K N
Sbjct: 603 FVVFFNNYSRFEYEKESKRSDIVCICTNDANVDKHKFLQDGN 644
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,752
Number of Sequences: 5004
Number of extensions: 63046
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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