Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N10
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me...   164   7e-41
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me...   164   7e-41
At2g44180.1 68415.m05496 methionyl aminopeptidase, putative / me...   158   5e-39
At3g51800.1 68416.m05680 metallopeptidase M24 family protein sim...    40   0.002
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi...    30   2.0  
At2g39370.1 68415.m04832 expressed protein                             28   6.2  
At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containi...    28   8.3  

>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to Methionine aminopeptidase 2 (EC
           3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
           sapiens} SP|P50579; contains Pfam profile PF00557:
           metallopeptidase family M24; supporting cDNA
           gi|11344921|gb|AF300880.1|AF300880
          Length = 439

 Score =  164 bits (398), Expect = 7e-41
 Identities = 73/114 (64%), Positives = 88/114 (77%)
 Frame = -3

Query: 775 TFGSTGRGQVHDXHGLLSLHENFDQQFVPLRLQSSKQLLNVINKNFGTLAFCKRWLERAG 596
           TFGSTG+G V +        +NFD   VPLRL  +KQLL  INKNF TLAFC+R+L+R G
Sbjct: 326 TFGSTGKGYVREDLECSHYMKNFDAGHVPLRLPRAKQLLATINKNFSTLAFCRRYLDRIG 385

Query: 595 ASRYAMALKDLCDKGVVDAYPPLCDIKGCYTAQFEHTILLRPTCKEVVSRGDDY 434
            ++Y MALK+LCD G+V  YPPLCD+KG Y +QFEHTILLRPTCKEV+S+GDDY
Sbjct: 386 ETKYLMALKNLCDSGIVQPYPPLCDVKGSYVSQFEHTILLRPTCKEVLSKGDDY 439


>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to Methionine aminopeptidase 2 (EC
           3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
           sapiens} SP|P50579; contains Pfam profile PF00557:
           metallopeptidase family M24; supporting cDNA
           gi|11344921|gb|AF300880.1|AF300880
          Length = 439

 Score =  164 bits (398), Expect = 7e-41
 Identities = 73/114 (64%), Positives = 88/114 (77%)
 Frame = -3

Query: 775 TFGSTGRGQVHDXHGLLSLHENFDQQFVPLRLQSSKQLLNVINKNFGTLAFCKRWLERAG 596
           TFGSTG+G V +        +NFD   VPLRL  +KQLL  INKNF TLAFC+R+L+R G
Sbjct: 326 TFGSTGKGYVREDLECSHYMKNFDAGHVPLRLPRAKQLLATINKNFSTLAFCRRYLDRIG 385

Query: 595 ASRYAMALKDLCDKGVVDAYPPLCDIKGCYTAQFEHTILLRPTCKEVVSRGDDY 434
            ++Y MALK+LCD G+V  YPPLCD+KG Y +QFEHTILLRPTCKEV+S+GDDY
Sbjct: 386 ETKYLMALKNLCDSGIVQPYPPLCDVKGSYVSQFEHTILLRPTCKEVLSKGDDY 439


>At2g44180.1 68415.m05496 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to SP|P50579 Methionine aminopeptidase
           2 (EC 3.4.11.18) (MetAP 2) {Homo sapiens}; contains Pfam
           profile PF00557: metallopeptidase family M24
          Length = 441

 Score =  158 bits (383), Expect = 5e-39
 Identities = 68/114 (59%), Positives = 88/114 (77%)
 Frame = -3

Query: 775 TFGSTGRGQVHDXHGLLSLHENFDQQFVPLRLQSSKQLLNVINKNFGTLAFCKRWLERAG 596
           TFGSTG+G V +        +N+D   VPLRL  +KQLL  INKNF TLAFC+R+L+R G
Sbjct: 328 TFGSTGKGYVREDLECSHYMKNYDVGHVPLRLPRAKQLLATINKNFSTLAFCRRYLDRLG 387

Query: 595 ASRYAMALKDLCDKGVVDAYPPLCDIKGCYTAQFEHTILLRPTCKEVVSRGDDY 434
            ++Y MALK+LCD G+++  PP+CD+KG Y +QFEHTILLRPTCKE++S+GDDY
Sbjct: 388 ETKYLMALKNLCDSGIIEPCPPVCDVKGSYISQFEHTILLRPTCKEIISKGDDY 441


>At3g51800.1 68416.m05680 metallopeptidase M24 family protein
           similar to SP|P50580 Proliferation-associated protein
           2G4 {Mus musculus}; contains Pfam profile PF00557:
           metallopeptidase family M24
          Length = 392

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = -3

Query: 688 LRLQSSKQLLNVINKNFGTLAFCKRWLERAGASRYAMALKDLCDKGVVDAYPPLCDIKGC 509
           L++++S+ +++ I +NF  + F  R LE     R  + L +  + G +  YP L +  G 
Sbjct: 255 LKMKASRFIISEIKQNFPRMPFTARSLEE---KRARLGLVECVNHGHLQPYPVLYEKPGD 311

Query: 508 YTAQFEHTILLRP 470
           + AQ + T+LL P
Sbjct: 312 FVAQIKFTVLLMP 324


>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 903

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 586 YAMALKDLCDKGVVDAYPPLCDI---KGCYTAQFEHTILLRPTCK 461
           + + ++ LCD   VDA   L D    KGC   +F   IL+R  CK
Sbjct: 150 FNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCK 194


>At2g39370.1 68415.m04832 expressed protein 
          Length = 328

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 531 PSATSRGATPHSSNTP--SCSDPPARKSCPVAMTTN 430
           P AT    TP +SNTP  SC+  PA +SC V+   N
Sbjct: 96  PLATGTVTTPVTSNTPFESCTVSPA-ESCQVSKELN 130


>At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 598

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 586 YAMALKDLCDKGVVDAYPPLCDI---KGCYTAQFEHTILLRPTCKE 458
           Y   L+ LCD G +     + D    + CY     +TIL+  TC++
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,253,548
Number of Sequences: 28952
Number of extensions: 324841
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)