Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N04
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    29   6.0  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   7.9  

>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 317 SSDRLRRPRSTGPGXARITVFGCNFVMLDTLSLINIICPPTYQ**RIRASTMDITQCSRN 496
           S  R R  RS       +T  GC+        + NI+C   +   ++   T +  Q   N
Sbjct: 518 SDSRKRISRSFSASSLMLTCIGCDSEFKPASQVTNIMCDQCFAWQKMSVLTSNCDQFMGN 577

Query: 497 SGP 505
           SGP
Sbjct: 578 SGP 580


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 682  RRSDGSLNELCLYRPPTVHAYRPFASMGRSCYDILESPLILVPNNS 819
            RRS        +  PPT H  R F++  +S  D+L   L    NNS
Sbjct: 1514 RRSYQPTTTTSMIVPPTTHHLRGFSAAAQSAQDLLNRLLPKQDNNS 1559


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 682  RRSDGSLNELCLYRPPTVHAYRPFASMGRSCYDILESPLILVPNNS 819
            RRS        +  PPT H  R F++  +S  D+L   L    NNS
Sbjct: 1514 RRSYQPTTTTSMIVPPTTHHLRGFSAAAQSAQDLLNRLLPKQDNNS 1559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,344,834
Number of Sequences: 27780
Number of extensions: 432960
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)