Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N02
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   157   1e-39
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   154   2e-38
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   7e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   1.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    26   7.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  157 bits (382), Expect = 1e-39
 Identities = 75/116 (64%), Positives = 86/116 (74%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           AAHTG T  AGRFTPG F N I   +RE RL++V DP  D Q I EAS+VNIPVIALC+T
Sbjct: 93  AAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDT 152

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DS L  VDIA+P N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRD
Sbjct: 153 DSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFXGXSXXVX-IENPXDLFVXXSRPFGQRXV 714
           TWE     +  +  IENP D+ V  +R +G R V
Sbjct: 56  TWEKLVLAARVIATIENPADVCVVSTRTYGHRAV 89


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  154 bits (373), Expect = 2e-38
 Identities = 74/116 (63%), Positives = 85/116 (73%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           AAHTG T  AGRFTPG F N I   +RE RL+IV DP  D Q I EAS+VNIPVIALC+T
Sbjct: 94  AAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDT 153

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DS L  VD+A+P N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRD
Sbjct: 154 DSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFXGXSXXVX-IENPXDLFVXXSRPFGQRXV 714
           TWE     +  +  IENP D+ V  SRP+G R V
Sbjct: 57  TWEKLVLAARVIATIENPADVCVISSRPYGHRAV 90


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -2

Query: 615 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAVPCNTKSSHSIGLMWWLLAR 436
           L+++L+P ++     EA   ++P I + +TD+  R V   +P N  S     L+  LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAVPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+AV  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 480 WCCMGQQCPQILVG 521
           WCC G+ C ++L G
Sbjct: 55  WCCNGKGCKKVLAG 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,255
Number of Sequences: 5004
Number of extensions: 55246
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)