Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N02
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   150   1e-36
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   150   1e-36
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    31   1.4  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.3  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    29   4.4  
06_03_0543 + 21967787-21970261                                         29   5.8  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.7  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  150 bits (364), Expect = 1e-36
 Identities = 67/116 (57%), Positives = 84/116 (72%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           A +TG    AGR TPG F NQ+Q +F E RLLI+ DP  DHQPI E++  NIP IA C+T
Sbjct: 95  AQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDT 154

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DSP+R+VDI +P N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRD
Sbjct: 155 DSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFX-GXSXXVXIENPXDLFVXXSRPFGQRXV 714
           TWE         V IENP D+ V  +RP+GQR V
Sbjct: 58  TWEKLQLAARVIVAIENPQDIIVQSARPYGQRAV 91


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  150 bits (364), Expect = 1e-36
 Identities = 67/116 (57%), Positives = 85/116 (73%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           A +TG    AGR TPG F NQ+Q +F E RLLI+ DP  DHQPI E++  NIP IA C+T
Sbjct: 95  AQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDT 154

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DSP+R+VDI +P N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRD
Sbjct: 155 DSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFX-GXSXXVXIENPXDLFVXXSRPFGQRXV 714
           TWE         V IENP D+ V  +RP+GQR V
Sbjct: 58  TWEKLQLAARVIVAIENPQDIIVQSARPYGQRAV 91


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 349 SPXVTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 474
           +P V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 459 TPDVNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 717 CXEXAAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLI--VLDPAQDHQPITEASYVNIPV 544
           C     HT  T    R TP AF +   AA  E R+ +  +   ++      EA Y +I V
Sbjct: 264 CWGVFRHTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEV 323

Query: 543 IALCNTDSPLR 511
             + + + P++
Sbjct: 324 FDMRSPEQPMQ 334


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,221,405
Number of Sequences: 37544
Number of extensions: 400147
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)