Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N02
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               188   5e-48
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.5  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.6  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   4.5  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   4.5  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   4.5  
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                29   5.9  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   7.8  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   7.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  188 bits (458), Expect = 5e-48
 Identities = 85/116 (73%), Positives = 96/116 (82%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           A+HTG T  AGRFTPG F NQIQAAFRE RLLIV DP  DHQP+TEASYVNIPVIA CNT
Sbjct: 91  ASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNT 150

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DSPLR VD+A+PCN K  HSIGLM+WLLAREVLR+RG + R   W+++ DL+FYRD
Sbjct: 151 DSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRD 206



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFX-GXSXXVXIENPXDLFVXXSRPFGQRXV 714
           TWE         V IENP D+ V  +RP+GQR +
Sbjct: 54  TWEKLLLAARIIVTIENPADVCVISARPYGQRAI 87


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -2

Query: 603 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 508
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 679  CGTFHTRCFX*PDPSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 500
            C   H+ C      SCI   S+ DCI  C+ PS     F C+ +C         T++C +
Sbjct: 866  CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918

Query: 499  CCP 491
            C P
Sbjct: 919  CHP 921


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 471 HSIGLMWWLLAREVLRLRGVLP 406
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 194  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 93
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 622 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 497
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 369 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 488
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 340 FSLSPXVTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 510
           + ++P  +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 235 YDIAPS-SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +3

Query: 360  HGRRTNQPQHPSAGHGEAHHEASTLHVPTTT--TSNQ*SGKTWCCMGQQCPQILVGSL 527
            HG  +NQP         +H    + H+PT    TS   +  T     +QCP    GS+
Sbjct: 1069 HGPGSNQPSDKIHSPATSHTSPVSTHLPTPNCHTSTPHTTTTTPNSNEQCPNTAAGSV 1126


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 627 REXR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAVPCNTK 478
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  +  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -2

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 394
           +SPL +  I VPCNT +S+     W+LLA  +  ++ VL  D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,180,999
Number of Sequences: 59808
Number of extensions: 466946
Number of successful extensions: 1018
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)