Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N02
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 372 TNQPQHPSAGHGEAHHEASTLH 437
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 59  CINTLHWLIILHES 18
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 59  CINTLHWLIILHES 18
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 628 ECSLDLVXKSTWCE 669
           E S+DLV  ST+CE
Sbjct: 260 ERSVDLVVTSTYCE 273


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = -2

Query: 606 VLDPAQDHQPITEASYVNIPVIALCNTDSP 517
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,568
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)