Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N02
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   157   6e-39
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   152   2e-37
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   138   4e-33
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    31   1.2  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   3.7  
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    28   6.4  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    28   8.5  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  157 bits (382), Expect = 6e-39
 Identities = 69/116 (59%), Positives = 86/116 (74%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           A +TG    AGR TPG F NQ+Q +F E RLLI+ DP  DHQPI E +  NIP+IA C+T
Sbjct: 95  AQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDT 154

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DSP+RFVDI +P N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+
Sbjct: 155 DSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYRE 210



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFX-GXSXXVXIENPXDLFVXXSRPFGQRXV 714
           TWE         V IENP D+ V  +RP+GQR V
Sbjct: 58  TWEKLQMAARVIVAIENPQDIIVQSARPYGQRAV 91


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  152 bits (369), Expect = 2e-37
 Identities = 68/116 (58%), Positives = 84/116 (72%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           A +TG    AGR TPG F NQ+Q +F E RLLI+ DP  DHQPI E +  NIP IA C+T
Sbjct: 96  AQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDT 155

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           DSP+ FVDI +P N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+
Sbjct: 156 DSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYRE 211



 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFX-GXSXXVXIENPXDLFVXXSRPFGQRXV 714
           TW+         V IENP D+ V  +RP+GQR V
Sbjct: 59  TWDKLQMAARVIVAIENPKDIIVQSARPYGQRAV 92


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  138 bits (334), Expect = 4e-33
 Identities = 62/110 (56%), Positives = 78/110 (70%)
 Frame = -2

Query: 705 AAHTGXTXNAGRFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
           A +TG    AGR TPG F NQ+Q +F E RLLI+ DP  DHQPI E +  NIP IA C+T
Sbjct: 96  AQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDT 155

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 376
           DSP+ FVDI +P N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 156 DSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205



 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 812 TWENFX-GXSXXVXIENPXDLFVXXSRPFGQRXV 714
           TW+         V IENP D+ V  +RP+GQR V
Sbjct: 59  TWDKLQMAARVIVAIENPKDIIVQSARPYGQRAV 92


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 612 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAVPCNTKSS 472
           ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 134 VVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 525 DSPLRFVDIAVPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388
           D  L   ++AV C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 324 PRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 226
           PR+R W QLN K L LS     K   + L+GLK
Sbjct: 59  PRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 666 TPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEA 565
           TP    NQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,400
Number of Sequences: 28952
Number of extensions: 309451
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)