Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N01
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    70   3e-13
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    70   4e-13
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   3.9  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   5.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXT-FRHLTQSAFGRLDPLFGSWKTPSKQKKNFNL 505
           AFRN P  E +NV +              F   T+SAFG LD +FGS    ++ KKN+ L
Sbjct: 220 AFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFL 279

Query: 504 PQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 379
           P+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 280 PENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXT-FRHLTQSAFGRLDPLFGSWKTPSKQKKNFNL 505
           AFRN P  E +NV +              F   T+SAFG LD +FGS    ++ KKN+ L
Sbjct: 220 AFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFL 279

Query: 504 PQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 379
           P+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 280 PENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 371 AMLKLNPYAAVXEEESYLRAAQKEELE 291
           A+LK + Y ++ EEES  R  ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 546 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXR 373
           S+++  KQKK  +  + + +  ++ RL +  E+R  +   NK+ +    KL  L   R
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAKAR 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,112
Number of Sequences: 5004
Number of extensions: 37840
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)