Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N01
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           81   1e-15
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    78   9e-15
02_04_0073 - 19471254-19472681                                         30   1.8  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXT-FRHLTQSAFGRLDPLFGSWKTPSKQKKNFNL 505
           AFRN P  +  NV +              F   T+SAF +L+ ++G+++ PS +KK F L
Sbjct: 225 AFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFIL 284

Query: 504 PQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 379
           P+PKMAN DL R++ SDE++ V++  NK V R  ++ NPL N
Sbjct: 285 PRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKN 326


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXT-FRHLTQSAFGRLDPLFGSWKTPSKQKKNFNL 505
           AFRN P  +  NV +              F   T+ AF +LD ++G + TP+ +KK F L
Sbjct: 224 AFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVL 283

Query: 504 PQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 379
           P+PKMAN DL+RL+ SDE++ V++  NK V     + NPL N
Sbjct: 284 PRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKN 325


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 620 GSGGHLGRFVI*LSPHSAGLTPYSGHGRHHRNKR 519
           G GG  G   +  +P   G +P S HG HHR+++
Sbjct: 8   GGGGGGGGLPM-TAPRPRGASPLSSHGHHHRSRK 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,143
Number of Sequences: 37544
Number of extensions: 304001
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)