Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N01
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    63   2e-10
AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   6.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXTFRHL-TQSAFGRLDPLFGSWKTPSKQ-KKNFN 508
           AFRN P  + +NV +                + T+SAF +LD ++G+    S Q KK ++
Sbjct: 219 AFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWS 278

Query: 507 LPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPL 385
           +P P MAN+D +R+++S+E+ K +RAP K  +      NPL
Sbjct: 279 VPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPL 319


>AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical
           protein Y18H1A.2 protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 343 PXLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRER 209
           P LKRK + E R+RK  +  +D+E+   K  K++   K +K R R
Sbjct: 148 PCLKRKELEEERKRK--REDSDSEEKAKKRHKKDKKKKKKKHRHR 190


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -3

Query: 578 PHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLPTNA*SV 408
           P+S   TP S     G+ HR     S      +PT+     SS+M S  S  LP+ + S 
Sbjct: 540 PYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIRLPSTSFSN 599

Query: 407 LHAN 396
            + N
Sbjct: 600 QYPN 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,441
Number of Sequences: 27780
Number of extensions: 223088
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)