Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_N01
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    73   2e-13
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    70   2e-12
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    30   2.0  
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    28   7.9  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXT-FRHLTQSAFGRLDPLFGSWKTPSKQKKNFNL 505
           AFRN P  E  +V +              F   T+SAF +L+ ++GS++ PS++KK + L
Sbjct: 226 AFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVL 285

Query: 504 PQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 379
           P+ KM N DL R++ SDEI+ V+    K   RA  K NPL N
Sbjct: 286 PRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKN 327



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
 Frame = -3

Query: 614 GGHLGRFVI*LSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPT--LTSHVFSSLMRSGR 441
           GGHLGRFVI        L    G       K++    P  +     L   + S  ++S  
Sbjct: 249 GGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVV 308

Query: 440 SSVLPTNA*SVLHAN*TRSPIXEAMLKLNPYAAVXEEESYLRAAQK 303
           + +      +VL  N  ++     MLKLNPYA   +  S L  AQ+
Sbjct: 309 NPIKKDAKRAVLKKNPLKN--LNVMLKLNPYAKTAKRMSLLAEAQR 352


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
 Frame = -2

Query: 681 AFRNXPXCEXLNVNKXXXXXXXXXXXXT-FRHLTQSAFGRLDPLFGSWKTPSKQKKNFNL 505
           AFRN P  E  +V +              F   T+SAF +L+ ++GS++ PS++KK + L
Sbjct: 227 AFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVL 286

Query: 504 PQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 379
           P+ KM N DL R++ SDE++ V+        RA  K NPL N
Sbjct: 287 PRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKN 328



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = -3

Query: 614 GGHLGRFVI*LSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPT--LTSHVFSSLMRSGR 441
           GGHLGRFVI        L    G       K++    P  +     L   + S  ++S  
Sbjct: 250 GGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVV 309

Query: 440 SSVLPTNA*SVLHAN*TRSPIXEAMLKLNPYAAVXEEESYLRAAQK 303
           + +   +  +VL  N  ++     M KLNPYA   +  S L  A +
Sbjct: 310 NPIKDGSKRAVLKKNPLKN--LNVMFKLNPYAKTAKRMSLLAEASR 353


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 601 PR*PPEPASGGQLVNIQXLTPGXVAEGPXXPXP 699
           PR PP  A GG+  N+    P     GP  P P
Sbjct: 652 PRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPP 684


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
            myosin heavy chain [Arabidopsis thaliana]
            gi|602328|emb|CAA84067.
          Length = 1242

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 295  LKALADAEKSGLKLSKRNPAMKAEKLRERRRKNI 194
            LKAL   EK    +S+R  A +A +L ERRRK +
Sbjct: 1092 LKALLQVEKQRADISERKCA-EARELGERRRKRL 1124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,671
Number of Sequences: 28952
Number of extensions: 220849
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)