Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M23
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.8  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 17/62 (27%), Positives = 23/62 (37%)
 Frame = -2

Query: 719 IXPPSPGXLGXINPIXXNPXSDXIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS 540
           I  P P   G   P    P      Q P+  +  PS P   +    A  L+PPL+    S
Sbjct: 127 IPVPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPSTPFPRFIPPNAYRLRPPLNPRFGS 186

Query: 539 AY 534
            +
Sbjct: 187 TH 188


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 17/62 (27%), Positives = 23/62 (37%)
 Frame = -2

Query: 719 IXPPSPGXLGXINPIXXNPXSDXIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS 540
           I  P P   G   P    P      Q P+  +  PS P   +    A  L+PPL+    S
Sbjct: 127 IPVPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPSTPFPRFIPPNAYRLRPPLNPRFGS 186

Query: 539 AY 534
            +
Sbjct: 187 TH 188


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 527 PSSLGMAKGVSPPYFQVNDESQASHLIS 444
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 527 PSSLGMAKGVSPPYFQVNDESQASHLIS 444
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,377
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)