Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M19
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    31   0.18 
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   2.2  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.9  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 215 LLQTQPGDVTRGYSDDL-PPTDETELTYEVPLRDE 114
           L   QP +V + + DDL PP  + ++T +VP+ DE
Sbjct: 102 LSSNQPTNVYKQHQDDLAPPEADNQITRDVPISDE 136


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 265 TKQAPATTASCAATLTGCCRPSPVTSRGATPTTSRRQTKPNSLTKS 128
           +K A  T +S AA+ T    P+  TS   TPT+S+      SL +S
Sbjct: 175 SKSASLTASSAAASPTVSFSPAS-TSENLTPTSSKSLASNTSLVQS 219


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 280 KRSKKTKQAPATTASCAATLTGCCRPSPVTSRGATPTTS 164
           K SKK   +P + AS  ATL+     S V S  + P TS
Sbjct: 194 KASKKLTSSPTSVASKKATLSSV---SKVASTSSLPVTS 229


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 274 SKKTKQAPATTASCAATLTGCCRPSPVTSRGATPTTSRRQTKPNSLT 134
           S      P TT +C  + +     +P+TS  +T ++S  Q   NS T
Sbjct: 578 STPVTSTPVTTTNCTTSTSVLYTSTPITSPNST-SSSSTQVSWNSTT 623


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 208 RPSPVTSRGATPTT----SRRQTKPNSLTKSPYETRATEPILMWNQQ 80
           R SPV+SR  +PT     +R QT  +S + S Y +  T P L ++++
Sbjct: 197 RASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,044
Number of Sequences: 5004
Number of extensions: 43146
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)