Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_M17
(886 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 28 8.7
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 78 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 215
STT E +SSTD EP + + + +RD R ++ D RDP
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTR--DTVNNRDTRDP 238
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 192 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 296
DS ++DP G+RR++ F E R V L+ D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135
>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 51 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 206
RS D ST R S+ S+P+ EL+ R++ A ++ TD + L
Sbjct: 218 RSYQDLHRQSTPQHGRRGSTQQSSQPKFVNELFYKQRAKSAHSQRPTDKLHL 269
>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 36 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 185
G S+ RS D A+ T PR ++ P P++ SRD +K
Sbjct: 300 GPSIARSHSDWAITRTKPRNRERAPESSQAPNDEAGKNPEVVSRDTMAQK 349
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Frame = +3
Query: 72 LPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFEC 251
LP PR + ST P R + DL + D V+ + + L+ P +
Sbjct: 535 LPIPRPRSQLHVST-LPRPVPRAKTAKDLVAADQTVRPVSQACRLQTPGSPEQNKQEEGA 593
Query: 252 ET----RLVKSHCLEPPDSRGSSVSISLP-DSATLASALXAFRHXPAGWXLXSXVPPS 410
+T + +K PP G+ S P D ++ S A +H PA PPS
Sbjct: 594 DTLSREQQLKPTRSAPPPPMGTRSSSPKPKDKLSVHSPTSAAKHPPAATKQQVHSPPS 651
>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 54 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 233
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P + +
Sbjct: 89 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEPQFIADK 147
Query: 234 VSRFECETRLVKSHCLEPP 290
T+ + +EPP
Sbjct: 148 -DNSSLLTQEKPAEFMEPP 165
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 78 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 188
S QER++ D + PRH EL PD+R D RV ++
Sbjct: 1453 SRVESQERQTMRD-TRPRHPDELRPDIR-HDIRVAQE 1487
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 43 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 132
+ T ST +R HP + S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 42 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHR----TELYPDLRSRDARVKKKTDSIDLR 209
S +R + D+ PS PR+ RKS + S PR R + P +RS ++ +
Sbjct: 904 SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPP 962
Query: 210 DPNGLRRRVSRFECETR 260
P RR+V+ E + R
Sbjct: 963 SPRRARRKVASPEEQDR 979
>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSE-PRHRTELYPD 155
P+T PR +R+S T S+ RH + L PD
Sbjct: 8 PNTIPRSDRRSRTGISQRHRHTSSLTPD 35
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,920
Number of Sequences: 59808
Number of extensions: 274614
Number of successful extensions: 1021
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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