Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M17
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53440.2 68416.m05898 expressed protein                             31   1.3  
At3g53440.1 68416.m05897 expressed protein                             31   1.3  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.8  
At1g68730.1 68414.m07855 zinc finger (DNL type) family protein c...    30   1.8  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.1  
At5g17160.1 68418.m02010 expressed protein                             28   9.5  

>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +3

Query: 99  RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 278
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 279 LEPPDSRGSSVSISLPDSATLASAL 353
               DSR   ++IS     +L  +L
Sbjct: 64  SPIEDSRSKKLNISKDGFPSLRRSL 88


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +3

Query: 99  RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 278
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 279 LEPPDSRGSSVSISLPDSATLASAL 353
               DSR   ++IS     +L  +L
Sbjct: 64  SPIEDSRSKKLNISKDGFPSLRRSL 88


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 102 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 275
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g68730.1 68414.m07855 zinc finger (DNL type) family protein
           contains Pfam profile PF05180: DNL zinc finger
          Length = 170

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +3

Query: 15  FYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 194
           FY+      +L+RS+    +   TP+Q  +S + +      ++L PD  S D+    +  
Sbjct: 39  FYKQQNPISALHRSKTTRVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDS---AEVA 95

Query: 195 SIDLRDPNGLRRRVSRFECET------RLVKSHCLE 284
           SID++ P   R     F C +      RL+  H  E
Sbjct: 96  SIDIKLPR--RSLQVEFTCNSCGERTKRLINRHAYE 129


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +3

Query: 36  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 215
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 216 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSSVSISLPDSA 335
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +3

Query: 75  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECE 254
           PST  R  R+ +T  +EP+  ++L     SR  R   K+ + D+ D   + + V++ E +
Sbjct: 65  PSTATRTTRRKTTTKAEPQPSSQLV----SRSCRSTSKSLAGDM-DQENINKNVAQ-EMK 118

Query: 255 TRLVK--SHCLEPPDSRGSSVSISLPDSAT 338
           T  VK  ++ L+ P + GS+   S   S T
Sbjct: 119 TSNVKFEANVLKTP-AAGSTRKTSAATSCT 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,757
Number of Sequences: 28952
Number of extensions: 206220
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)