Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_M15
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 166 2e-41
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.030
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.5
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.6
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.6
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 6.0
SB_41180| Best HMM Match : DUF229 (HMM E-Value=0) 29 6.0
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 166 bits (403), Expect = 2e-41
Identities = 74/100 (74%), Positives = 85/100 (85%)
Frame = -2
Query: 624 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 445
EPRLLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WL
Sbjct: 118 EPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWL 177
Query: 444 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 325
LAREVLR+RG + R W+++ DL+FYRDPEE+EK+EQ A
Sbjct: 178 LAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217
Score = 70.9 bits (166), Expect = 1e-12
Identities = 32/54 (59%), Positives = 37/54 (68%)
Frame = -1
Query: 817 WXKLFLXXXXXXXXXXPXDVFVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAF 656
W KL L P DV VIS+RP+GQRA+LK+A+HTG T IAGRFTPG F
Sbjct: 55 WEKLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTF 108
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.030
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 374 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 541
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 542 ITGMLTY 562
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 603 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 508
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 619 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 491
S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 362 R*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 532
R N+ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 533 HKAITG 550
+TG
Sbjct: 63 EFTLTG 68
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 471 HSIGLMWWLLAREVLRLRGVLP 406
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 196 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 95
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 622 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 497
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 361 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 510
+V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
>SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 721
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 696 VXRXLRDVSHQVLFTXPDPKLHSXEPRLLIVLDPAQDH 583
+ + L++ +F+ DPKL + + RLL +P DH
Sbjct: 434 IFKELKETGFASMFSEDDPKLGTFQMRLLGFTEPPVDH 471
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,059,574
Number of Sequences: 59808
Number of extensions: 463350
Number of successful extensions: 1052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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