Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M14
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.9  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 516 GAGRQRVCRGASPGKTSGTLPRE 584
           GAGR R C+ ASPG   G+L  E
Sbjct: 348 GAGRHRYCKPASPGHEEGSLTEE 370


>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 416

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 486 EQKQEHHGEHGAGRQRVCRGASPGKTSGTLPRELPPSPRV 605
           E K E   E+G  RQR+  G S   T+ T+P  L PS  V
Sbjct: 367 ELKDEDKQENGQQRQRISLGESEHVTAATIP--LAPSDHV 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,428
Number of Sequences: 59808
Number of extensions: 231180
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)