BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_M13 (778 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 212 1e-53 UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 202 8e-51 UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 144 2e-33 UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 142 9e-33 UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 108 2e-22 UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 99 1e-19 UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 97 6e-19 UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 89 2e-16 UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15 UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 71 2e-11 UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 71 3e-11 UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 62 1e-08 UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 8e-08 UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 59 1e-07 UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07 UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 58 2e-07 UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 57 4e-07 UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 6e-07 UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 56 1e-06 UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 56 1e-06 UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 53 7e-06 UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 51 3e-05 UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 50 5e-05 UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 48 3e-04 UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 47 6e-04 UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 43 0.007 UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.5 UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0 UniRef50_Q4Y6V0 Cluster: Putative uncharacterized protein; n=11;... 33 8.0 >UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens (Human) Length = 403 Score = 212 bits (517), Expect = 1e-53 Identities = 98/150 (65%), Positives = 114/150 (76%) Frame = -3 Query: 767 HTQMXXVKQXXKKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXX 588 HTQM + KK H+ I N GT +K+ WARE E+ +PV+ VF QDEM D I Sbjct: 165 HTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTK 224 Query: 587 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 408 TSRWHTKKLPRKTH+GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKI Sbjct: 225 GKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKI 284 Query: 407 YRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318 Y+IGQG KDGK+IKNNAST+YDLS+KSI Sbjct: 285 YKIGQGYLIKDGKLIKNNASTDYDLSDKSI 314 Score = 106 bits (255), Expect = 5e-22 Identities = 50/67 (74%), Positives = 57/67 (85%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115 KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393 Query: 114 KDRIREE 94 KDRI +E Sbjct: 394 KDRIAKE 400 >UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bilateria|Rep: 60S ribosomal protein L3-like - Homo sapiens (Human) Length = 407 Score = 202 bits (493), Expect = 8e-51 Identities = 93/150 (62%), Positives = 110/150 (73%) Frame = -3 Query: 767 HTQMXXVKQXXKKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXX 588 HTQM + KK HI I N GT +KV WA+ EK +PV SVF+Q E+ D I Sbjct: 165 HTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTK 224 Query: 587 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 408 TSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI Sbjct: 225 GRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKI 284 Query: 407 YRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318 +RIG+G H +DGK++KNNAST YD++ KSI Sbjct: 285 FRIGRGPHMEDGKLVKNNASTSYDVTAKSI 314 Score = 91.9 bits (218), Expect = 2e-17 Identities = 44/66 (66%), Positives = 49/66 (74%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115 KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393 Query: 114 KDRIRE 97 K +E Sbjct: 394 KHLEKE 399 >UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Trypanosomatidae|Rep: Ribosomal protein L3, putative - Trypanosoma brucei Length = 480 Score = 144 bits (350), Expect = 2e-33 Identities = 72/153 (47%), Positives = 91/153 (59%), Gaps = 3/153 (1%) Frame = -3 Query: 767 HTQMXXVKQXX---KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIX 597 HTQ+ ++ KK H+ I N GT K+ A+ EK + +DSVF Q E D Sbjct: 216 HTQLRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCA 275 Query: 596 XXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 417 RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +N Sbjct: 276 VTKGHGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLN 335 Query: 416 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318 KKIY++G+ + + N A+T YDL+ K+I Sbjct: 336 KKIYQLGRAVSME-----PNQATTAYDLTAKTI 363 Score = 86.6 bits (205), Expect = 6e-16 Identities = 40/67 (59%), Positives = 48/67 (71%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115 KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442 Query: 114 KDRIREE 94 KDRIR E Sbjct: 443 KDRIRRE 449 >UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3; n=1; Caenorhabditis elegans|Rep: Putative uncharacterized protein rpl-3 - Caenorhabditis elegans Length = 353 Score = 142 bits (344), Expect = 9e-33 Identities = 68/105 (64%), Positives = 79/105 (75%) Frame = -3 Query: 632 VFAQDEMXDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 453 V A +M D I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221 Query: 452 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318 GQKG+HHRT +N KIYRIG+ ++G KNN STE+DL++K+I Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTI 263 Score = 96.3 bits (229), Expect = 8e-19 Identities = 46/66 (69%), Positives = 53/66 (80%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115 +G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342 Query: 114 KDRIRE 97 +D + E Sbjct: 343 RDFLAE 348 >UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella natans|Rep: Ribosomal protein L3 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 370 Score = 108 bits (259), Expect = 2e-22 Identities = 51/113 (45%), Positives = 71/113 (62%) Frame = -3 Query: 734 KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRW 555 KK + G+ + K+ + + K I ++S+F ++++ D I SRW Sbjct: 158 KKKYFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRW 217 Query: 554 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 396 +LPRKTH+GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG Sbjct: 218 GITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIG 270 Score = 55.2 bits (127), Expect = 2e-06 Identities = 27/56 (48%), Positives = 36/56 (64%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 127 KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365 >UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2; Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry - Rattus norvegicus Length = 380 Score = 98.7 bits (235), Expect = 1e-19 Identities = 52/102 (50%), Positives = 66/102 (64%) Frame = -3 Query: 623 QDEMXDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 444 QDE+ D I T + P + +G K+ C+GAWHP+RV+F+VA+ GQK Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251 Query: 443 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 318 GYHH + NKKI +IGQG KDGK+IKNNA TEY LS+KSI Sbjct: 252 GYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSI 292 Score = 58.4 bits (135), Expect = 2e-07 Identities = 33/67 (49%), Positives = 42/67 (62%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115 KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370 Query: 114 KDRIREE 94 K+ EE Sbjct: 371 KECTAEE 377 >UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep: 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B) (TARBP-B). - Bos Taurus Length = 340 Score = 96.7 bits (230), Expect = 6e-19 Identities = 59/145 (40%), Positives = 79/145 (54%) Frame = -3 Query: 764 TQMXXVKQXXKKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXX 585 TQM + KK H+ N G K+ WA + E+ +PV+ +F + I Sbjct: 123 TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKG 180 Query: 584 XXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIY 405 +S W+TKK+P KTH+ + ACI W +VA A QKG HH T +NKKIY Sbjct: 181 KHYKGISSHWYTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIY 233 Query: 404 RIGQGIHKKDGKVIKNNASTEYDLS 330 +IGQG K+GK+IKNNAST+Y S Sbjct: 234 KIGQGYLIKNGKIIKNNASTDYTKS 258 Score = 81.0 bits (191), Expect = 3e-14 Identities = 36/62 (58%), Positives = 46/62 (74%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115 K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338 Query: 114 KD 109 KD Sbjct: 339 KD 340 >UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermococcaceae|Rep: 50S ribosomal protein L3P - Pyrococcus furiosus Length = 365 Score = 88.6 bits (210), Expect = 2e-16 Identities = 51/147 (34%), Positives = 74/147 (50%) Frame = -3 Query: 764 TQMXXVKQXXKKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXX 585 TQ +K KK + + E+K + +E K + V V + E+ D I Sbjct: 169 TQPWVIK-LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKG 227 Query: 584 XXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIY 405 RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ Sbjct: 228 KGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLI 287 Query: 404 RIGQGIHKKDGKVIKNNASTEYDLSEK 324 IG+ +GK +K + +TE +++ K Sbjct: 288 AIGE-----NGK-LKLDENTEIEITPK 308 >UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED: similar to 60S ribosomal protein L3 (L4) - Macaca mulatta Length = 153 Score = 85.0 bits (201), Expect = 2e-15 Identities = 41/63 (65%), Positives = 50/63 (79%) Frame = -2 Query: 282 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 103 +G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+ Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147 Query: 102 REE 94 +E Sbjct: 148 AKE 150 >UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarchaeota|Rep: 50S ribosomal protein L3P - Methanococcus jannaschii Length = 335 Score = 71.3 bits (167), Expect = 2e-11 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Frame = -3 Query: 767 HTQMXXVKQXXKKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXX 588 HT KK I I E+++ +A+E K + + VF + E+ D I Sbjct: 144 HTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTK 203 Query: 587 XXXXXXXTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNK 414 RW K + + KG+ R V IG W P V ++V GQ GYH RTE NK Sbjct: 204 GKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNK 263 Query: 413 KIYRIG 396 +I +IG Sbjct: 264 RILKIG 269 >UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P - Nanoarchaeum equitans Length = 321 Score = 70.9 bits (166), Expect = 3e-11 Identities = 42/133 (31%), Positives = 61/133 (45%) Frame = -3 Query: 764 TQMXXVKQXXKKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXX 585 TQ +K K I I K+ +A K + ++ VF + + D I Sbjct: 139 TQPWKIK-LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKG 197 Query: 584 XXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIY 405 R+H + K+ KG+RKV IG+ P R+ TV GQ GYH RTE NK I Sbjct: 198 KGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLII 257 Query: 404 RIGQGIHKKDGKV 366 +IG+ ++ + G V Sbjct: 258 KIGEPLNVEGGWV 270 >UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3 - Candidatus Nitrosopumilus maritimus SCM1 Length = 331 Score = 62.5 bits (145), Expect = 1e-08 Identities = 34/113 (30%), Positives = 50/113 (44%) Frame = -3 Query: 734 KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRW 555 KK +I + G + +E K I +D +F D RW Sbjct: 156 KKPYIFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRW 215 Query: 554 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 396 + KK K+ K +R+V +G P V +TV RAGQ G+H R E +K+I +G Sbjct: 216 NVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG 268 >UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured marine group II euryarchaeote DeepAnt-JyKC7|Rep: Ribosomal protein L3 - uncultured marine group II euryarchaeote DeepAnt-JyKC7 Length = 358 Score = 59.7 bits (138), Expect = 8e-08 Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Frame = -3 Query: 764 TQMXXVKQXXKKXH-IXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXX 588 TQ VK K I + G K+ WA E I +D V+ + D + Sbjct: 169 TQPALVKSVPSKTPVIMEVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITK 228 Query: 587 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 408 R+ K L K K R++ +G + V T+ +AGQ GYH RTE+NK+I Sbjct: 229 GKGWQGVIKRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRI 288 Query: 407 YRI 399 RI Sbjct: 289 LRI 291 >UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermoplasmatales|Rep: 50S ribosomal protein L3P - Thermoplasma volcanium Length = 331 Score = 59.3 bits (137), Expect = 1e-07 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%) Frame = -3 Query: 734 KKXHIXXIXXNXG-TXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSR 558 KK I + G + +++ +A H K I + + D + R Sbjct: 150 KKPEIFELRIGGGNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQR 209 Query: 557 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG 390 + K LPRK K R + +G WHP V TV +AGQ GY RT N ++ + +G Sbjct: 210 FGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG 265 >UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; Candida albicans|Rep: Putative uncharacterized protein - Candida albicans (Yeast) Length = 173 Score = 58.4 bits (135), Expect = 2e-07 Identities = 31/98 (31%), Positives = 49/98 (50%) Frame = +3 Query: 432 VMITFLTSTSYSERHPRRMPSSNAGNFPKXXXXXXXXXXXXPTRSDTFVSFALGDTNAVX 611 +++T LTS+ + MPS+N N + P+ DT + GD+N + Sbjct: 1 MVVTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDIN 60 Query: 612 HFILGKHRIXRDRFLXMFSGPSHFVLXGTPVXXNXXNV 725 HFIL ++R+ R+ F +F GP +FV GT V + V Sbjct: 61 HFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQV 98 >UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryarchaeota|Rep: 50S ribosomal protein L3P - Methanopyrus kandleri Length = 361 Score = 58.4 bits (135), Expect = 2e-07 Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Frame = -3 Query: 734 KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRW 555 KK + ++ +A E + I VF + E+ D RW Sbjct: 161 KKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRW 220 Query: 554 HTKKLPRKTHKGL--RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 393 RKT + R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ Sbjct: 221 GVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE 276 >UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylothermus marinus F1|Rep: 50S ribosomal protein L3 - Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) Length = 395 Score = 57.2 bits (132), Expect = 4e-07 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Frame = -3 Query: 734 KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRW 555 KK I I GT +++ +A + + VD VF + + D I R+ Sbjct: 216 KKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRF 275 Query: 554 HTKKLPR--KTHKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIG 396 K+LPR K KG RK IG+ P + + + GQ G+H RTE NK+I +IG Sbjct: 276 GVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328 >UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarchaeota|Rep: 50S ribosomal protein L3P - Halobacterium salinarium (Halobacterium halobium) Length = 335 Score = 56.8 bits (131), Expect = 6e-07 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 4/107 (3%) Frame = -3 Query: 698 GTXEDKVRWAREHXEKP--IPVDSVFAQDEMXDCIXXXXXXXXXXXTSRWHTKKLPRK-T 528 GT D++ +A + E VF E D RW +K K Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226 Query: 527 HKGLRK-VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG 390 +G R+ + +G W+PSRV TV + GQ GYH RTE+NK++ I G Sbjct: 227 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDG 273 >UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured marine group II euryarchaeote HF70_59C08|Rep: Ribosomal protein L3 - uncultured marine group II euryarchaeote HF70_59C08 Length = 338 Score = 55.6 bits (128), Expect = 1e-06 Identities = 33/112 (29%), Positives = 48/112 (42%) Frame = -3 Query: 734 KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRW 555 K I + G ++ WA E + + ++ VF D I R+ Sbjct: 160 KSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRF 219 Query: 554 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 399 K L K K R++ +G + V T+ +AGQ GYH RTE NK+I RI Sbjct: 220 GVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI 271 >UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarchaeota|Rep: 50S ribosomal protein L3P - Uncultured methanogenic archaeon RC-I Length = 337 Score = 55.6 bits (128), Expect = 1e-06 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Frame = -3 Query: 698 GTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRWHTKKLPRKTHKG 519 G + +A+ K + + VFA E+ D RW RK + Sbjct: 170 GDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHART 229 Query: 518 LRK--VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 396 +K V +G W+P R+ + V + GQ GYH RTE NK+I ++G Sbjct: 230 GKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG 272 >UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum symbiosum Length = 328 Score = 53.2 bits (122), Expect = 7e-06 Identities = 28/113 (24%), Positives = 48/113 (42%) Frame = -3 Query: 734 KKXHIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRW 555 K+ +I G+ +++ + ++ K + V D R Sbjct: 154 KRPYIFEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRM 213 Query: 554 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 396 K+ K+ K +R++ +G P V +TV RAGQ G+H R E NK+I +G Sbjct: 214 GAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVG 266 >UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum pernix Length = 344 Score = 51.2 bits (117), Expect = 3e-05 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Frame = -3 Query: 674 WAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVAC 501 +A++ I V+ VF + ++ D I RW K+LPR K KG R+ Sbjct: 182 YAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR--- 238 Query: 500 IGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHK 381 IGA R +F +AGQ G+H RTE NK+I I +K Sbjct: 239 IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK 279 >UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum pendens Hrk 5|Rep: 50S ribosomal protein L3 - Thermofilum pendens (strain Hrk 5) Length = 334 Score = 50.4 bits (115), Expect = 5e-05 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Frame = -3 Query: 698 GTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRWHTKKLPR--KTH 525 G E + A E K + + VF + + D I R+ +++PR K Sbjct: 165 GPPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHR 224 Query: 524 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 375 KG ++ +G P+ + F GQ G+H RTE NK+I ++G K+ Sbjct: 225 KGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVGDAESLKE 273 >UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus solfataricus Length = 351 Score = 47.6 bits (108), Expect = 3e-04 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Frame = -3 Query: 764 TQMXXVKQXXKKX-HIXXIXXNXGTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXX 588 TQ + KK + I G + ++ +A K I + VF + ++ D + Sbjct: 163 TQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTK 222 Query: 587 XXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNK 414 R+ +LPR K KG RK+ G S+T + GQ G+H RTE NK Sbjct: 223 GKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNK 280 Query: 413 KIYRIG 396 +I +IG Sbjct: 281 RIIKIG 286 >UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: Ribosomal protein L3 - Mus musculus (Mouse) Length = 67 Score = 46.8 bits (106), Expect = 6e-04 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = -2 Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEK 208 KGC +G KKR++TLRKSL V TKR ALEK Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67 Score = 37.9 bits (84), Expect = 0.28 Identities = 16/19 (84%), Positives = 19/19 (100%) Frame = -3 Query: 374 GKVIKNNASTEYDLSEKSI 318 GK+IKNNAST+YDLS+KSI Sbjct: 1 GKLIKNNASTDYDLSDKSI 19 >UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein L3P - Ignicoccus hospitalis KIN4/I Length = 358 Score = 43.2 bits (97), Expect = 0.007 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Frame = -3 Query: 698 GTXEDKVRWAREHXEKPIPVDSVFAQDEMXDCIXXXXXXXXXXXTSRWHTKKLPR--KTH 525 G+ + + +A+ + + V+ V + D I R+ K+LP+ K Sbjct: 191 GSPVEALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHR 250 Query: 524 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 399 KG R+V +W S+ V + GQ GYH RT+ NK++ I Sbjct: 251 KGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMI 290 >UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12 - Homo sapiens (Human) Length = 103 Score = 35.5 bits (78), Expect = 1.5 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = -3 Query: 242 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 120 C C + G +R T +SLTP PS M SR R HSW H Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103 >UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; Plasmodium falciparum 3D7|Rep: Putative uncharacterized protein - Plasmodium falciparum (isolate 3D7) Length = 93 Score = 35.1 bits (77), Expect = 2.0 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +1 Query: 1 FFFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 102 FFFFFF + N YF+ L L ++ GCG FA Sbjct: 19 FFFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52 >UniRef50_Q4Y6V0 Cluster: Putative uncharacterized protein; n=11; Plasmodium (Vinckeia)|Rep: Putative uncharacterized protein - Plasmodium chabaudi Length = 2145 Score = 33.1 bits (72), Expect = 8.0 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = -3 Query: 425 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIKQRLCDD 297 ++ K RI I+KKDGK IK NA E+D+ +K IK LC D Sbjct: 842 KIGKNSNRINM-IYKKDGK-IKKNAYREFDIYDK-IKGILCQD 881 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 685,761,739 Number of Sequences: 1657284 Number of extensions: 12938480 Number of successful extensions: 31306 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 30370 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 31272 length of database: 575,637,011 effective HSP length: 99 effective length of database: 411,565,895 effective search space used: 65438977305 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -